G48921


Basic Information

Item Value
gene id G48921
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 640876 ~ 691037 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU61135
acttCTCTTAAAatagtgctttgttttttctctcaggCAGAGTTGCTGCCACCCCCTCTCTCGCTCCcatctctcctgtctctctccagggGGCCCCACTCACTCTGTCAGCCACAGACACTCAGCACAACAAAGTGCAAACTCAACACAcgacaccccccccaccccagaaaaagattttaaaaagaccgcaccccccaccccttatTCCAGCTCAGGGTCTTCATTACTTTATTGATTGGAGTCGTTAAATAGGAGCAGTAATCTGTCCGGCTGTTAATCCGTCACTCCTTGGCAGGGGCCGGAGCCGTTAACCCCTTGAGCACCAGAGGCACCCGCGTCTCCGCCAGCCCCCCCAATAGCCACAGCTTctatattaattaactaattaattaatacaccttCACAGAGAAGCAGGGAGCCTGCCAATGCAATAACCTGCCCATTACGTCGGCTCtgatgatgatgtcattgttctgttctgtgcaCTGAAACATTACACCTGAACTCTAACCCCCCCTGTAGTTTCATTATCGTTATTACTGTAGTGCATTTCCTTTCATTATTGGATTCTgctgtgtgtgcgcgtgtgtgcgcgtgtgtgcgtgtgagtgtctgtgtttgagtgtgtgtgtgtgtagcagcaACCCCCCTCAGATGGCTCTTGGGCGCCTCTTCTGTAGGGATTCCatctttgGCTCTCCACCATCTTCATCCGGTACAGGGCA
>TU61136
acttCTCTTAAAatagtgctttgttttttctctcaggCAGAGTTGCTGCCACCCCCTCTCTCGCTCCcatctctcctgtctctctccagggGGCCCCACTCACTCTGTCAGCCACAGACACTCAGCACAACAAAGTGCAAACTCAACACAcgacaccccccccaccccagaaaaagattttaaaaagaccgcaccccccaccccttatTCCAGCTCAGGGTCTTCATTACTTTATTGATTGGAGTCGTTAAATAGGAGCAGTAATCTGTCCGGCTGTTAATCCGTCACTCCTTGGCAGGGGCCGGAGCCGTTAACCCCTTGAGCACCAGAGGCACCCGCGTCTCCGCCAGCCCCCCCAATAGCCACAGCTTctatattaattaactaattaattaatacaccttCACAGAGAAGCAGGGAGCCTGCCAATGCAATAACCTGCCCATTACGTCGGCTCtgatgatgatgtcattgttctgttctgtgcaCTGAAACATTACACCTGAACTCTAACCCCCCCTGTAGTTTCATTATCGTTATTACTGTAGTGCATTTCCTTTCATTATTGGATTCTgctgtgtgtgcgcgtgtgtgcgcgtgtgtgcgtgtgagtgtctgtgtttgagtgtgtgtgtCTGAGTGTGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU61135 True 728 lncRNA 0.50 2 640876 641904
TU61136 False 645 lncRNA 0.49 2 640876 691037

Neighbor

gene id symbol gene type direction distance location
AMCG00008403 rfx1,rfx1a,LOC108239327,LOC105013142 coding upstream 11439 609033 ~ 629437 (+)
AMCG00008402 NA coding upstream 99832 540113 ~ 541044 (+)
AMCG00008395 NA coding upstream 131019 506943 ~ 509857 (+)
AMCG00008396 NA coding upstream 134419 494240 ~ 506457 (+)
AMCG00008391 NA coding upstream 213531 425827 ~ 427345 (+)
AMCG00008410 NA coding downstream 18211 709248 ~ 712619 (+)
AMCG00008412 NA coding downstream 25058 716095 ~ 719874 (+)
AMCG00008411 NA coding downstream 84354 775391 ~ 778431 (+)
AMCG00008418 atp13a1 coding downstream 94389 785426 ~ 799063 (+)
AMCG00008417 NA coding downstream 115722 806759 ~ 813360 (+)
G48915 NA non-coding upstream 8483 629884 ~ 632393 (+)
G48830 NA non-coding upstream 86616 552467 ~ 554260 (+)
G48818 NA non-coding upstream 151010 488625 ~ 489866 (+)
G48796 NA non-coding upstream 152292 427881 ~ 488584 (+)
G48947 NA non-coding downstream 3431 694468 ~ 696113 (+)
G48961 NA non-coding downstream 57561 748598 ~ 750602 (+)
G48996 NA non-coding downstream 74834 765871 ~ 783981 (+)
G49066 NA non-coding downstream 238669 929706 ~ 930827 (+)
G49069 NA non-coding downstream 242108 933145 ~ 936281 (+)
G48846 NA other upstream 52430 587280 ~ 588446 (+)
G48811 NA other upstream 88970 473745 ~ 551906 (+)
AMCG00008397 ccdc130 other upstream 115551 517499 ~ 525325 (+)
AMCG00008376 NA other upstream 377854 260274 ~ 263022 (+)
AMCG00008375 cacna1a other upstream 436481 153189 ~ 204395 (+)
G49013 NA other downstream 185517 876554 ~ 879513 (+)
AMCG00008423 NA other downstream 274801 965838 ~ 968583 (+)
G49208 NA other downstream 631774 1322811 ~ 1324269 (+)
AMCG00008451 ubl5 other downstream 934257 1625294 ~ 1628333 (+)
G49298 s1pr2,LOC106601285,LOC107672500,LOC107711272,LOC107587933 other downstream 1239617 1930654 ~ 1936502 (+)

Expression


Co-expression Network