RNA id: CI01000113_01554726_01565897.mRNA


Basic Information

Item Value
RNA id CI01000113_01554726_01565897.mRNA
length 2380
RNA type mRNA
GC content 0.49
exon number 11
gene id CI01000113_01554726_01565897
representative True

Chromosome Information

Item Value
chromosome id CI01000113
NCBI id null
chromosome length 2886875
location 1554144 ~ 1565897 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GATGCACTATGTGGCGAGTGGTTCCCTGTCCTTCAGTTCTCTGGGCCTGCTCCGTCTGTTTGGGGCATCTTGGTCCTGGAGCCTTGCAGCAGGTCTGGGTGTTTACTTAGGAACAGGAGGCTGGCGGTACCTGTATGTGGTTGTTCGTACGGCTAAAAGGGACCTCAATGGTCTTTATGTGCTGCTGAGGGTTAAACTGGCGCTATGGCATCATATCCGTCACCGAAACACCATACCCTCCATCTTTGCACAAACCGTGGCTCAACACCCAGACAAGCCTGCGCTCGTGTATGAAGCCACTGGAGAAACATGGACTTTTTGCCAGTTAGATCAGATCTCCAATGCTGTGGCCCATTGGGCACTGAGCCAGGGCTGGACCTCAGGAGATGTGGTGGCACTCTTCATGGAGAGCCGGCCGCTCCAAGTGGCGCTCTGGCTTGGCCTGGCCAAAGTAGGTGTGGAGGCTGCGCTCATTAACTTCAACCTCCGACGGGATTCGCTCCTGCACTGCGTGGGTGTGTCAGCATCCCGAGGGATGGTGTTTGGAGCAGAGCTAGCAGATGCCGTGTCTGAAGTGAGCTCCTCCTTGAGTGAGACCATGGTGCGGTTCAGCACGGGAGACCTCAGACCAGACCAGATGGCTGCTCTGAAATGTCAGCCCCTTGACTCCATTCTGGCATCTGCCCCTCGACACCCACCATCTACCATTGTGTCCAAGGGCTTCAATGATCGTTTGTTCTATATCTACACTTCTGGCACCACGGGACTCCCTAAAGCTGCTATAGTGGTGCACAGCCGATATTACAGGATTGCTGCTTTCGGGTACCATTCTTTCCGTATGCGGCCAGACGATATCATCTATGACTGTTTACCCCTCTACCACTCAGCAGGTAATATTATGGGTGTGGGCCAGTGTCTGATTCACGGTATAACTGTGGTGGTCAAGAAGAAGTTCTCAGCAAGCCGCTTCTGGGAAGACTGTATCAAACATAACTGCACTGTTGTGCAGTACATAGGCGAGATTTGCCGTTACTTGCTGTCCCAGCCTGTGCGGCCCTCGGAGCGACAGCACCGGGTGCGTTTAGCTGTGGGGAACGGGCTGCGGCCGAGCGTGTGGGAGGCTTTCATGGAACGCTTTGGAGTGAAACAGATTGGCGAGTTCTATGGAGCCACCGAGTGCAACTGCAGCATTGCCAATATGGATGGCAAGGTTGGTGCTTGTGGGTTTAACAGTCGCATTCTGCCTAATGTGTACCCCATCCGACTGGTGAAAGTGAACGAGGAAACCATGGAACTGGTTCGAGACAAGCAGGGACTGTGTGTGCCTTGCCGACCTGGAGAGCCTGGGCTCTTGGTGGGGAGAATTAATCAGCAGGATCCTCTGCGTCGGTTTGATGGGTATGCTAGTCAGGATGCCACCAGGAAGAAGATCGCCTACAATGTATTCAGGAAAAATGACTCAGCATATCTGTCAGGTGATGTTTTAGTTATGGATGAGCTTGGATACATGTACTTCCGGGACAGGAGTGGTGACACGTTTCGTTGGAAAGGTGAGAACGTCTCCACTACTGAAGTGGAGGGAACACTGAGCAGCCTGTTGGGACAGACTGATGTAGCAGTGTTTGGAGTAAACGTGCCAGGAACATTTAAAATTCAGAAGACCAGATTGCAGAGGGAAGGATACGATCCACGGCTCACAACTGACCAGATCTACTTTCTGAACTCCAGAGCAGGCCGTTATGAGCTTGTGAACGAGGAGCTGTACAATGCTTTTGAAGAAGGAAGGATATCCCTTTGAGACGAAGAAGAGAAGGTAGTCTGAACCTACCTGGTCATCTTCTAACCTGTGACCGTGTGCAGTGTAACCGCAATACTGCAACAGGAACCACTCAGATTAGTTCTGCTAGTATGTAGACACTTTTTTTGCATTTACATTTTTCAAATTTATAGTATTGCATTTGAAGAGGTTTCTTCGATTTGATAGCCTACTAGAAAGCACAAGCTGTGTCTTGACAATGACAAACTGAATATCTGATATGCAATAGATGAAACAGTAAGAGTGAATTGTTCTTTTAATGTGTTATTCTTAGTTGATGGTAGTGCACGGGTGACAATACATGTGCACTCCCAATTTAACAACAACAACACAACCTCTAAAGCCAACTGGATGAAAGATGAAACTCCACTAGGATGTCTGGCTTTGACACTAGACCTATACCATTACAAACCAGCTAGTTAAATACATTTTGAGCCTGAACGATGATGATTAGTGTACGTTAACAAGATTTTTACTACATAAACATTGTTAAAATGCCTAACTCCAAAGTGACTTTTAGAAAGCTGAAAGATACAGAGTGTCTTTGTAAACAGCCACAATAAA

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K08745 SLC27A1_4, FATP1_4; solute carrier family 27 (fatty acid transporter), member 1/4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU378123 lncRNA downstream 6609 1547128 ~ 1547535 (-) True G332601
TU378122 lncRNA downstream 7380 1546417 ~ 1546764 (-) True G332600
TU378121 lncRNA downstream 7921 1546003 ~ 1546223 (-) True G332599
TU378120 lncRNA downstream 8560 1545366 ~ 1545584 (-) True G332598
TU378119 lncRNA downstream 9725 1544190 ~ 1544419 (-) True G332597
TU378126 lncRNA upstream 3411 1569308 ~ 1569772 (-) True CI01000113_01569971_01571224
TU378134 lncRNA upstream 20129 1586026 ~ 1586275 (-) True G332611
TU378147 lncRNA upstream 79103 1645000 ~ 1645350 (-) True G332621
TU378148 lncRNA upstream 92828 1658725 ~ 1658938 (-) True G332622
TU378149 lncRNA upstream 96859 1662756 ~ 1662984 (-) True G332623
CI01000113_01502427_01506373.mRNA mRNA downstream 47771 1502161 ~ 1506373 (-) True CI01000113_01502427_01506373
CI01000113_01480199_01500090.mRNA mRNA downstream 53873 1479477 ~ 1500271 (-) True CI01000113_01480199_01500090
CI01000113_01458405_01476967.mRNA mRNA downstream 77177 1458405 ~ 1476967 (-) True CI01000113_01458405_01476967
CI01000113_01432095_01456239.mRNA mRNA downstream 97905 1431986 ~ 1456239 (-) True CI01000113_01432095_01456239
CI01000113_01404787_01423732.mRNA mRNA downstream 130412 1404666 ~ 1423732 (-) True CI01000113_01404787_01423732
CI01000113_01569971_01571224.mRNA mRNA upstream 3441 1569338 ~ 1571802 (-) False CI01000113_01569971_01571224
CI01000113_01589305_01600983.mRNA mRNA upstream 23257 1589154 ~ 1601012 (-) True CI01000113_01589305_01600983
CI01000113_01652528_01653349.mRNA mRNA upstream 86489 1652386 ~ 1653446 (-) True CI01000113_01652528_01653349
CI01000113_01846674_01851715.mRNA mRNA upstream 280471 1846368 ~ 1851790 (-) True CI01000113_01846674_01851715
CI01000113_01854931_01857730.mRNA mRNA upstream 288869 1854766 ~ 1858875 (-) True CI01000113_01854931_01857730
TU377621 other downstream 1107307 390227 ~ 446837 (-) True G332160
TU377671 other downstream 1504659 47990 ~ 49485 (-) False G332210
TU378176 other upstream 581317 2147214 ~ 2148558 (-) True G332649
TU378382 other upstream 684948 2250845 ~ 2251213 (-) True G332837
TU378401 other upstream 801719 2367616 ~ 2368331 (-) True CI01000113_02356565_02370009

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00050611 False 2906 mRNA 0.47 13 NC_007114.7 52545014 ~ 52603683 (+)