LOC110530500 (LOC106569325)


Basic Information

Item Value
gene id LOC110530500
gene name LOC106569325
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 72555633 ~ 72562473 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021613641.2
aTTTGTTTACATAGCAGATTAGGAtaaattaacgtggcaggttggGCAATGCTACAGTTGTCCCAGATACGAAAGAAACTGCCACGGACAAATGGCGAGCGTTTCTTGACATCAAGAAACGCTAATGTCAGTAAACGCCCCTAATTGCATCTGCAATTACACCCTTCTCCTTCACATGTTGGGCTGTCCAGGCTGGATAGCTACAGGCAGAGCGCATCGATACATTTTCCGCGTACACTGCCGTGCAGTTGCAGCGTCATTGtgcaaactgtttgaatgaagttcggtgtagctactagctagctggACAGAAACATATCGTAGCCAACTACACCCGACAGCGAATTCGCGCCCCGGTGACTGGAGTTTGAGAATAGCAACCAAAACAGCCTAAAAGATGACCGTATTTACAGTGAATGTGAAATGGGGAAAAGAGAAGTTTGATGCAATAGAGCTGAACACAGAAGAACCTCCCATGGTTTTCAAGGCTCAGCTCTTTGCCTTGACCGGGGTACAACCAGAGAGACAGAAGGTTATGGTCAAGGGAGGCACACTTAAGGATGATGACTGGGGAAACATTAAATTAAAGAATGGGATGACTCTGTTGATGATGGGCTCAGCGGAGGCCCTGCCCGAGGAGCCTGCAGTCAGGCCCATGTTTGTAGAGGACATGACTGAGGACCAGCTGGCCTCAGCTATGGAGATGCCTTGTGGACTGACCAACCTGGGAAACACCTGCTATATGAACGCTACAGTGCAGTGTCTTCGCTCCGTGCCAGAGCTTAAAGGAGCCCTCAGAAGGTACGCAGGTGCTCTGGGGTCCTCAGGGGCCAACGCATCATCCCAGTACATCACAGCAGCCCTCCGTGACCTCTACGAGACCATGGACGAAACTTCCTCCAGCATACCCCCGATCATCCTGCTGCAGTTCCTGCACATGGCTTTCCCCCAGTTCGCTGAGAAGGGAGACCAGGGACAGTACCTTCAGCAGgaTGCCAACGAGTGCTGGTTGCAGATGATGCGGGTTCTTCAGCAGAAGTTGGAACCACAAGACTCAGACGCTCCCATGGAGACTGACACTGAGAGTGGAGCTGCTGCTGTCGCTGCCAAGAAGAACTTCATTGACCAGTATTTTGGAGTGGAGTATGAAACCACTATGAAATGTACAGAGTCTGAAGATGAGGAGCCAGCTAAAGGTAAAGAGAGCCAGCTTCAACTCAGCTGTTTCATCAACCAGGAGGTCAAATACCTGGCCACTGGGCTCAGGCTGAGACTGCAGGAAGAAATCACCAAGCTGTCCCCGTCTTTGCAAAGAAATGCCCTGTACATAAAATCTTCTAAAGTCAGCCGCCTCCCTGCCTACCTGACCATTCAGATGGTTCGCTTTTTCTACAAAGAGAAGGAATCTGTCAATGCCAAAGTCCTAAAGGATGTCAAGTTCCCGCTGATGCTGGATGTGTATGAGCTGTGTACCTCTGAGCTGCAAGAGAAGATGGTGGCAGTCAGGTCAAAGTTCAAGGAGATTGAGGACAAGAAGCTGGAGAAACAGTCACagaagCAGGTGGAGAAGAAAGTGGGAGACAAACCGAAGGAAGTGAAATATGAGCCCTTTTCATTTGATGACGACCTGGGCTCCAACAACAGCGGTTACTACGACTTGCAGGCAGTGCTGACACACCAGGGCCGATCCAGCTCCTCCGGACACTATGTTGGCTGGGTCAAGAGGAAAGAAGACGAGTGGGTGAAGTTTGATGACGACAAGGTGAGTGTGGTGTCTCCAGAGGATATACTGAGGCTGTCCGGTGGAGGAGACTGGCATATAGCCTACGTCCTACTGTACGGACCCCGACGACTGGAAATACTTGAAGAGGAGAAACAGTAATCAACCTAATGCAAAAAAACTAATCTAACCAACAAATGCCATTTCCAAGCACTGTCTACCCTGCATAGATGTGCAATAAATTCTGGGTGTCTTTATAAAGTAACTTGGACAGATGTTTGTAAAGCCATCCTATATCAACATGAGTGGAGGAAGGTTTTAAATGGTTTATTGAGCCAGGCAATCTCTGGACTGGATCATTGAGCGGTTGAGTTTCTAGTTCTGCAGTTTCATTGTTTTATACACattgtatattttttaaatccttgAACAAGGTGCTCATGTCAGTACTTCTGTAGTCATAACTAATCAGCTGTACAGTCTTTGGCCAAGTTATATAATCTGGTTCAGGTGTCTTTCAATTTACCCTGTACCTTTAATTCAAATGTATTGGAGACCACCCCTATCACCTACAGTGCCCACTATTCAAACCATAATGAATCCTTGCATCTCTTTTGGAAACAGAACTGTCTTGCACATTGCTTTCGTCATTGTGATTTGTCATCATACGAGCGGTTCAATACCTCTAATACAGTGTGACTATAACGCTTCTCTCTCATACATGCAGTCATTATCCTGATGGCTTTTCATAAATGGTGAAAATAAACTTATACCAAACCATG
>XM_021613642.2
aTTTGTTTACATAGCAGATTAGGAtaaattaacgtggcaggttggGCAATGCTACAGTTGTCCCAGATACGAAAGAAACTGCCACGGACAAATGGCGAGCGTTTCTTGACATCAAGAAACGCTAATGTCAGTAAACGCCCCTAATTGCATCTGCAATTACACCCTTCTCCTTCACATGTTGGGCTGTCCAGGCTGGATAGCTACAGGCAGAGCGCATCGATACATTTTCCGCGTACACTGCCGTGCAGTTGCAGCGTCATTGtgcaaactgtttgaatgaagttcggtgtagctactagctagctggACAGAAACATATCGTAGCCAACTACACCCGACAGCGAATTCGCGCCCCGGTGACTGGAGTTTGAGAATAGCAACCAAAACAGCCTAAAAGATGACCGTATTTACAGTGAATGTGAAATGGGGAAAAGAGAAGTTTGATGCAATAGAGCTGAACACAGAAGAACCTCCCATGGTTTTCAAGGCTCAGCTCTTTGCCTTGACCGGGGTACAACCAGAGAGACAGAAGGTTATGGTCAAGGGAGGCACACTTAAGGATGATGACTGGGGAAACATTAAATTAAAGAATGGGATGACTCTGTTGATGATGGGCTCAGCGGAGGCCCTGCCCGAGGAGCCTGCAGTCAGGCCCATGTTTGTAGAGGACATGACTGAGGACCAGCTGGCCTCAGCTATGGAGATGCCTTGTGGACTGACCAACCTGGGAAACACCTGCTATATGAACGCTACAGTGCAGTGTCTTCGCTCCGTGCCAGAGCTTAAAGGAGCCCTCAGAAGGTACGCAGGTGCTCTGGGGTCCTCAGGGGCCAACGCATCATCCCAGTACATCACAGCAGCCCTCCGTGACCTCTACGAGACCATGGACGAAACTTCCTCCAGCATACCCCCGATCATCCTGCTGCAGTTCCTGCACATGGCTTTCCCCCAGTTCGCTGAGAAGGGAGACCAGGGACAGTACCTTCAGCAGgaTGCCAACGAGTGCTGGTTGCAGATGATGCGGGTTCTTCAGCAGAAGTTGGAACCACAAGACTCAGACGCTCCCATGGAGACTGACACTGAGAGTGGAGCTGCTGCTGTCGCTGCCAAGAAGAACTTCATTGACCAGTATTTTGGAGTGGAGTATGAAACCACTATGAAATGTACAGAGTCTGAAGATGAGGAGCCAGCTAAAGGTAAAGAGAGCCAGCTTCAACTCAGCTGTTTCATCAACCAGGAGGTCAAATACCTGGCCACTGGGCTCAGGCTGAGACTGCAGGAAGAAATCACCAAGCTGTCCCCGTCTTTGCAAAGAAATGCCCTGTACATAAAATCTTCTAAAGTCAGCCGCCTCCCTGCCTACCTGACCATTCAGATGGTTCGCTTTTTCTACAAAGAGAAGGAATCTGTCAATGCCAAAGTCCTAAAGGATGTCAAGTTCCCGCTGATGCTGGATGTGTATGAGCTGTGTACCTCTGAGCTGCAAGAGAAGATGGTGGCAGTCAGGTCAAAGTTCAAGGAGATTGAGGACAAGAAGCTGGAGAAACAGTCACagaagGTGGAGAAGAAAGTGGGAGACAAACCGAAGGAAGTGAAATATGAGCCCTTTTCATTTGATGACGACCTGGGCTCCAACAACAGCGGTTACTACGACTTGCAGGCAGTGCTGACACACCAGGGCCGATCCAGCTCCTCCGGACACTATGTTGGCTGGGTCAAGAGGAAAGAAGACGAGTGGGTGAAGTTTGATGACGACAAGGTGAGTGTGGTGTCTCCAGAGGATATACTGAGGCTGTCCGGTGGAGGAGACTGGCATATAGCCTACGTCCTACTGTACGGACCCCGACGACTGGAAATACTTGAAGAGGAGAAACAGTAATCAACCTAATGCAAAAAAACTAATCTAACCAACAAATGCCATTTCCAAGCACTGTCTACCCTGCATAGATGTGCAATAAATTCTGGGTGTCTTTATAAAGTAACTTGGACAGATGTTTGTAAAGCCATCCTATATCAACATGAGTGGAGGAAGGTTTTAAATGGTTTATTGAGCCAGGCAATCTCTGGACTGGATCATTGAGCGGTTGAGTTTCTAGTTCTGCAGTTTCATTGTTTTATACACattgtatattttttaaatccttgAACAAGGTGCTCATGTCAGTACTTCTGTAGTCATAACTAATCAGCTGTACAGTCTTTGGCCAAGTTATATAATCTGGTTCAGGTGTCTTTCAATTTACCCTGTACCTTTAATTCAAATGTATTGGAGACCACCCCTATCACCTACAGTGCCCACTATTCAAACCATAATGAATCCTTGCATCTCTTTTGGAAACAGAACTGTCTTGCACATTGCTTTCGTCATTGTGATTTGTCATCATACGAGCGGTTCAATACCTCTAATACAGTGTGACTATAACGCTTCTCTCTCATACATGCAGTCATTATCCTGATGGCTTTTCATAAATGGTGAAAATAAACTTATACCAAACCATG

Function

NR:

description
ubiquitin carboxyl-terminal hydrolase 14-like isoform X2

GO:

id name namespace
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0004221 obsolete ubiquitin thiolesterase activity molecular_function
GO:0008234 cysteine-type peptidase activity molecular_function

KEGG:

id description
K11843 USP14, UBP6; ubiquitin carboxyl-terminal hydrolase 14

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021613641.2 False 2502 mRNA 0.47 16 72555633 72562473
XM_021613642.2 True 2499 mRNA 0.47 16 72555633 72562473

Neighbor

gene id symbol gene type direction distance location
LOC110530497 LOC106569328 coding downstream 139108 72350135 ~ 72416525 (-)
LOC110530495 LOC106569329 coding downstream 247418 72237331 ~ 72308215 (-)
LOC110530493 LOC106569333 coding downstream 404594 72149066 ~ 72151039 (-)
LOC110530492 LOC106569335 coding downstream 417445 72135683 ~ 72138188 (-)
gjc2 gjc2 coding downstream 421660 72112251 ~ 72133973 (-)
LOC110530503 LOC106569322 coding upstream 829 72563302 ~ 72634023 (-)
LOC110530505 NA coding upstream 75240 72637713 ~ 72639354 (-)
LOC110530506 LOC106569320 coding upstream 168112 72730585 ~ 72772383 (-)
npc1 LOC106569313 coding upstream 422374 72984847 ~ 73015471 (-)
LOC110530977 LOC106569312 coding upstream 453128 73015601 ~ 73104694 (-)
G744521 NA non-coding downstream 28731 72526692 ~ 72526902 (-)
G744511 NA non-coding downstream 44150 72511149 ~ 72511483 (-)
G744436 NA non-coding downstream 73476 72408966 ~ 72482157 (-)
G744404 NA non-coding downstream 190963 72364423 ~ 72364670 (-)
G744400 NA non-coding downstream 193688 72361733 ~ 72361945 (-)
G744572 NA non-coding upstream 79984 72642457 ~ 72643202 (-)
G744593 NA non-coding upstream 119511 72681984 ~ 72700153 (-)
G744608 NA non-coding upstream 154863 72695048 ~ 72720467 (-)
G744747 NA non-coding upstream 235265 72797738 ~ 72798961 (-)
G744129 NA other downstream 230641 72324192 ~ 72324992 (-)
G743961 NA other downstream 377766 72177584 ~ 72177867 (-)
G743450 NA other downstream 840008 71685190 ~ 71715625 (-)
G743447 NA other downstream 875356 71678685 ~ 71682299 (-)
G743421 NA other downstream 879848 71675445 ~ 71675785 (-)
G745300 NA other upstream 818828 73381301 ~ 73381701 (-)
G745292 c8 other upstream 823179 73385652 ~ 73391433 (-)
LOC110530984 NA other upstream 1380792 73939248 ~ 73944430 (-)
G746434 NA other upstream 1780156 74342629 ~ 74359974 (-)

Expression


Co-expression Network