G743450


Basic Information

Item Value
gene id G743450
gene name NA
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 71685190 ~ 71715625 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU843988
TAAAACAGAGGTGGTTCTCAGAGTTGGAATCAGACATGAAGATGAAGGCTCTGGTGAGATCTCTCCTCTTGCTCGCTGTGGCTAACCTGCTGGTCAGAGGTCAGACCCAGACTGAGACCAGGTATGAAGACATCATCACAGCTGCTTCAAATCAGCTGCTTCCTATGGAAGAGCAGGCTTTCCATCCGCTTCTGAACCAGCTGGAAGTCGAGACTTTGAATACAGAGGATGTGGACCAGTCTGAGGTGTCTGTAAGGTTGAGCTTCCCCCTGCAGGAGACGCTCTGCAGTAAGGCACAGGGGCAGCAAGGCCAACCATGCCCTCTGAAGAAAAAC
>TU843989
GCTCAGAGTAGGAATCAGACATGAAGATGAAGGCTCTGGTGAGATCTCTCCTCTTGCTCGCTGTGGCTAACCTGCTGGTCAGAGGTCAGACCCAGACTGAGACCAGGTATGAAGACATCATCACAGCTGCTTCAAATCAGCTGCTTCCTATGGAAGAGCAGGCTTTCCATCCGCTTCTGAACCAGCTGGAAGTCGAGACTTTGAATACAGAGGATGTGGACCAGTCTGAGGTGTCTGTAAGGTTGAGCTTCCCCCTGCAGGAGACGCTCTGCAGTAAGGCACAGGGGCAGCAAGGCCAACCATGCCCTCTGAAGAAAAAC
>TU843991
GGAATCAGACATGAAGATGAAGGCTCTGGTGAGATCTCTCCTCTTGCTCGCTGTGGCTAACCTGCTGGTCAGAGGTCAGACCCAGACTGAGACCAGGTATGAAGACATCATCACAGCTGCTTCAAATCAGCTGCTTCCTATGGAAGAGCAGGCTTTCCATCCGCTTCTGAACCAGCTGGAAGTCGAGACTTTGAATACAGAGGATGTGGACCAGTCTGAGGTGTCTGTAAGGTTGAGCTTCCCCCTGCAGGAGACGCTCTGCAGTAAGGCACAGGGGCAGCAAGGCCAACCATGCCCTCTGAAGAAAAAC
>TU843996
GGAATCAGACATGAAGATGAAGGCTCTGGTGAGATCTCTCCTCTTGCTCGCTGTGGCTAACCTGCTGGTCAGAGGTCAGACCCAGACTGAGACCAGGTATGAAGACATCATCACAGCTGCTTCAAATCAGCTGCTTCCTATGGAAGAGCAGGCTTTCCATCCGCTTCTGAACCAGCTGGAAGTCGAGACTTTGAATACAGAGGATGTGGACCAGTCTGAGGTGTCTGTAAGGTTGAGCTTCCCCCTGCAGGAGACGCTCTGCAGTAAGGCACAGGGGCAGCAAGGCCAACCATGCCCTCTGAAGAAAAAC
>TU843997
TAAAACAGAGGTGGTTCTCAGAGTTGGAATCAGACATGAAGATGAAGGCTCTGGTGAGATCTCTCCTCTTGCTCGCTGTGGCTAACCTGCTGGTCAGAGGTCAGACCCAGACTGAGACCAGGTATGAAGACATCATCACAGCTGCTTCAAATCAGCTGCTTCCTATGGAAGAGCAGGCTTTCCATCCGCTTCTGAACCAGCTGGAAGTCGAGACTTTGAATACAGAGGATGTGGACCAGTCTGAGGTGTCTGTAAGGTTGAGCTTCCCCCTGCAGGAGACGCTCTGCAGTAAGGCACAGGGGCAGCAAGGCCAACCATGCCCTCTGAAGAAAAAC

Function

NR:

description
cathelicidin 2

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU843988 False 335 TUCP 0.52 3 71685190 71715625
TU843989 False 320 TUCP 0.53 2 71685190 71697479
TU843991 False 310 TUCP 0.53 3 71685190 71715600
TU843996 False 310 TUCP 0.53 3 71685190 71715600
TU843997 True 335 TUCP 0.52 3 71685190 71715625

Neighbor

gene id symbol gene type direction distance location
abcb8 LOC106569347 coding downstream 25198 71653751 ~ 71659992 (-)
LOC110530478 LOC106599847 coding downstream 35219 71641430 ~ 71649971 (-)
zgc:92591 LOC105019623 coding downstream 222603 71461083 ~ 71462587 (-)
LOC110530476 LOC106569351 coding downstream 248453 71434344 ~ 71436737 (-)
LOC118965547 LOC106610709 coding downstream 288574 71394099 ~ 71396616 (-)
LOC118936258 guk1 coding upstream 102795 71818420 ~ 71829182 (-)
arf1 arf1 coding upstream 120112 71835737 ~ 71837683 (-)
LOC110530975 wnt3a coding upstream 139840 71855465 ~ 71884542 (-)
snap47 LOC106569337 coding upstream 366255 72081880 ~ 72097290 (-)
iba57 iba57 coding upstream 387523 72103148 ~ 72105382 (-)
G743447 NA non-coding downstream 2891 71678685 ~ 71682299 (-)
G743419 LOC106569346 non-coding downstream 7940 71677021 ~ 71677250 (-)
G743420 LOC106569346 non-coding downstream 8439 71676519 ~ 71676751 (-)
G743444 NA non-coding downstream 16632 71666988 ~ 71668558 (-)
G743443 LOC106569346 non-coding downstream 18298 71666163 ~ 71666892 (-)
LOC110530481 LOC100136187 non-coding upstream 215 71713760 ~ 71716272 (-)
G743463 NA non-coding upstream 891 71716516 ~ 71716728 (-)
G743464 NA non-coding upstream 3274 71718899 ~ 71720142 (-)
G743469 NA non-coding upstream 8460 71724085 ~ 71724293 (-)
G743488 NA non-coding upstream 25856 71741481 ~ 71748201 (-)
G743421 NA other downstream 9405 71675445 ~ 71675785 (-)
G743076 NA other downstream 614108 71070634 ~ 71071082 (-)
G742383 LOC106569128 other downstream 842733 70835358 ~ 70842457 (-)
G742038 NA other downstream 1159239 70519387 ~ 70525951 (-)
G743961 NA other upstream 461959 72177584 ~ 72177867 (-)
G744129 NA other upstream 608567 72324192 ~ 72324992 (-)
G744608 NA other upstream 979423 72695048 ~ 72720467 (-)
G745300 NA other upstream 1665676 73381301 ~ 73381701 (-)
G745292 c8 other upstream 1670027 73385652 ~ 73391433 (-)

Expression


Co-expression Network