LOC110530481 (LOC100136187)


Basic Information

Item Value
gene id LOC110530481
gene name LOC100136187
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 71713760 ~ 71716272 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036986852.1
CTATAAAACAGAGGTGGTTCTCAGAGTTGGAATCAGACATGAAGATGAAGGCTCTGGTGAGATCTCTCCTCTTGCTCGCTGTGGCTAACCTGCTGGTCAGAGGTCAGACCCAGACTGAGACCAGGTATGAAGACATCATCACAGCTGCTTCAAATCAGCTGCTGCCTGTGGAAGAGCAGGCTTTCCATCCGCTTCTGAACCAGCTAGAAGTCGAGACTTTGAATACAGAGGATGTGGACCAGTCTGAGGTGTCTGTAAGGTTGAGCTTCCCCCTGCAGGAGACGCTCTGCAGTAAGGCACAGGGGCAGCAAGGCCAACCATGCCCTCTGAAGAAAAATGGGAAACGAATGATGTGCAGCATGGAGGTCAGACATCCGATTCTGGAGATTGGCAACACCCTCAACACTGACCGGTCTGACATTTCTTGTGAATACATGGAGGCAGAAGTTCAGAAGATTCGGACAAGAAGAGGCAAGGACAGCGGAGGCCCTAAGATGGGTAGAAAAGATTCCAAGGGGGGTTGGAGAGGTCGTCCTGGGAGTGGCTCTCGTCCTGGGTTTGGCTCCGGCATTGCTGGAGCTAGCGGAGTAAACCATGTTGAAACTCTCACTGCATAGAACAGCACAACACACCCTTTGGATAACTGCAAGATATCTCCCCAATCAAAGAAACTTCAAAAGCACTCAAAAGTTGTGGTTAATGGGTGAACATGAAACCTTgagcttctttaaaaaaatgcTTCTGGTAACTCTTTTGTCTACATTatgaattgttttgtattttgtagctATCATTGTTTGTAATAATGTACCTATTCTTACATGCCAATCTTTGAATTTTAACTACCGAAAATTATTTCCAGTTCATGTTTACTGCACTAATAAACTGCAAAATAAGTTTTCAAAAGACACTGTGTGTAAAATATGTAATTTCATGGCAGTTTAGGAAGTTTTTGAGAGCTCTACGTTTTTCGTTTTTGTGTTTATTGTTCTTTAAAAAAAGATAATTTCTCTGTTGTTCTGTTAGGCCGACAGTTTAGACTTTGCTGAAACATGTCGGgatggtttcctggacacagattgaGTTAAGAGCAGTGACctatcattcagggcaggtgggggcagagccccacatttttagccAGAcatttgcctgttttgcatgttattttggcattaatacgtgtcacatatcagtttgccaacaatgtaaaaaatatatatatt
>XM_036986853.1
ctgtatatataaaaaaagtttTACACTGTTTTGTATATTCAACAAGAAACATATCACACAGACAAGGACGTCTGTGATAATTCTTGCCATCCAATTATGTTTGCTTGTCAACTATCTCTCCTGGTCAATTAAGTTGTGTATGTTTAGGTGTTTAGCACTTAAGTCCACTTTACATGTATACTTAATACACGTCCAAGTTTGACGAGTGCTAATTTCACTCAACAACTTTTTTTAaagtgtagtagacattacagatCATCATAGTCTAGCCCATAACGGATGACTGTTTTAGCATGTATAAAGTAGAATATAAAACATACATCATCTTAACAAACATTATTAGAATTAGAATAATTGTTCATTACGCTGTTTAAACTAAAATATGTATCTAATTTAGCAATATACTGCAAAGGGGCCAATGGTCTGACTGATCTAATTGGCAGACAACATGTAGAGCCATTTTCGTAGACACAGATTAGGCCTAACCTAGTCCTGGAAGAAGCATGACAACCTGCAGGCAGTGGTTTCCCAAAAGCTTGGATTGCTCAACCCTAGGTTTTCCTATAAGAACAAGACAGACTATAAAACAGAGGTGGTTCTCAGAGTTGGAATCAGACATGAAGATGAAGGCTCTGGTGAGATCTCTCCTCTTGCTCGCTGTGGCTAACCTGCTGGTCAGAGGTCAGACCCAGACTGAGACCAGGTATGAAGACATCATCACAGCTGCTTCAAATCAGCTGCTGCCTGTGGAAGAGCAGGCTTTCCATCCGCTTCTGAACCAGCTAGAAGTCGAGACTTTGAATACAGAGGATGTGGACCAGTCTGAGGTGTCTGTAAGGTTGAGCTTCCCCCTGCAGGAGACGCTCTGCAGTAAGGCACAGGGGCAGCAAGGCCAACCATGCCCTCTGAAGAAAAATGGGAAACGAATGATGTGCAGCATGGAGGTCAGACATCCGATTCTGGAGATTGGCAACACCCTCAACACTGACCGGTCTGACATTTCTTGTGAATACATGGAGGCAGAAGTTAAGATTCGGACAAGAAGAGGCAAGGACAGCGGAGGCCCTAAGATGGGTAGAAAAGATTCCAAGGGGGGTTGGAGAGGTCGTCCTGGGAGTGGCTCTCGTCCTGGGTTTGGCTCCGGCATTGCTGGAGCTAGCGGAGTAAACCATGTTGAAACTCTCACTGCATAGAACAGCACAACACACCCTTTGGATAACTGCAAGATATCTCCCCAATCAAAGAAACTTCAAAAGCACTCAAAAGTTGTGGTTAATGGGTGAACATGAAACCTTgagcttctttaaaaaaatgcTTCTGGTAACTCTTTTGTCTACATTatgaattgttttgtattttgtagctATCATTGTTTGTAATAATGTACCTATTCTTACATGCCAATCTTTGAATTTTAACTACCGAAAATTATTTCCAGTTCATGTTTACTGCACTAATAAACTGCAAAATAAGTTTTCAAAAGACACTGTGTGTAAAATATGTAATTTCATGGCAGTTTAGGAAGTTTTTGAGAGCTCTACGTTTTTCGTTTTTGTGTTTATTGTTCTTTAAAAAAAGATAATTTCTCTGTTGTTCTGTTAGGCCGACAGTTTAGACTTTGCTGAAACATGTCGGgatggtttcctggacacagattgaGTTAAGAGCAGTGACctatcattcagggcaggtgggggcagagccccacatttttagccAGAcatttgcctgttttgcatgttattttggcattaatacgtgtcacatatcagtttgccaacaatgtaaaaaatatatatatt
>TU844011
tttgctaaaatgtaacacaacaaaatgtgaaataagtcaaatggtatgaatactttctgaaggcactgtatatataaaaaaagtttTACACTGTTTTGTATATTCAACAAGAAACATATCACACAGACAAGGACGTCTGTGATAATTCTTGCCATCCAATTATGTTTGCTTGTCAACTATCTCTCCTGGTCAATTAAGTTGTGTATGTTTAGGTGTTTAGCACTTAAGTCCACTTTACATGTATACTTAATACACGTCCAAGTTTGACGAGTGCTAATTTCACTCAACAACTTTTTTTAaagtgtagtagacattacagatCATCATAGTCTAGCCCATAACGGATGACTGTTTTAGCATGTATAAAGTAGAATATAAAACATACATCATCTTAACAAACATTATTAGAATTAGAATAATTGTTCATTACGCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036986852.1 False 1226 mRNA 0.43 4 71713760 71715628
XM_036986853.1 False 1802 mRNA 0.41 4 71713760 71716207
TU844011 True 433 lncRNA 0.31 1 71715840 71716272

Neighbor

gene id symbol gene type direction distance location
LOC100136187 LOC100136187 coding downstream 7217 71704996 ~ 71706543 (-)
LOC118936275 LOC100136187 coding downstream 16287 71695702 ~ 71697473 (-)
abcb8 LOC106569347 coding downstream 53768 71653751 ~ 71659992 (-)
LOC110530478 LOC106599847 coding downstream 63789 71641430 ~ 71649971 (-)
zgc:92591 LOC105019623 coding downstream 251173 71461083 ~ 71462587 (-)
LOC118936258 guk1 coding upstream 102213 71818420 ~ 71829182 (-)
arf1 arf1 coding upstream 119530 71835737 ~ 71837683 (-)
LOC110530975 wnt3a coding upstream 139258 71855465 ~ 71884542 (-)
snap47 LOC106569337 coding upstream 365673 72081880 ~ 72097290 (-)
iba57 iba57 coding upstream 386941 72103148 ~ 72105382 (-)
G743447 NA non-coding downstream 31461 71678685 ~ 71682299 (-)
G743419 LOC106569346 non-coding downstream 36510 71677021 ~ 71677250 (-)
G743420 LOC106569346 non-coding downstream 37009 71676519 ~ 71676751 (-)
G743444 NA non-coding downstream 45202 71666988 ~ 71668558 (-)
G743443 LOC106569346 non-coding downstream 46868 71666163 ~ 71666892 (-)
G743463 NA non-coding upstream 309 71716516 ~ 71716728 (-)
G743464 NA non-coding upstream 2692 71718899 ~ 71720142 (-)
G743469 NA non-coding upstream 7878 71724085 ~ 71724293 (-)
G743488 NA non-coding upstream 25274 71741481 ~ 71748201 (-)
G743489 NA non-coding upstream 26631 71742838 ~ 71747546 (-)
G743421 NA other downstream 37975 71675445 ~ 71675785 (-)
G743076 NA other downstream 642678 71070634 ~ 71071082 (-)
G742383 LOC106569128 other downstream 871303 70835358 ~ 70842457 (-)
G742038 NA other downstream 1187809 70519387 ~ 70525951 (-)
G743961 NA other upstream 461377 72177584 ~ 72177867 (-)
G744129 NA other upstream 607985 72324192 ~ 72324992 (-)
G744608 NA other upstream 978841 72695048 ~ 72720467 (-)
G745300 NA other upstream 1665094 73381301 ~ 73381701 (-)
G745292 c8 other upstream 1669445 73385652 ~ 73391433 (-)
G743450 NA other downstream 215 71685190 ~ 71715625 (-)

Expression


Co-expression Network