LOC110530478 (LOC106599847)


Basic Information

Item Value
gene id LOC110530478
gene name LOC106599847
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 71641430 ~ 71649971 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021613581.2
ACCCGCATGTTGCAGTTCATAATTTGACCGCTTTAGATGCCGGTGTAGCAGCAACATTGTAGCTGTGAATAACAGCTGGCTAGCGAACGTTAACAACATTTCCACTGAGGCTGCATTCCACTACTATTAGCTAGCTAAAGGCTAGCTTTATTGACAAAATATGCAGAAGTATGAAAAACTTGAGAAGATTGGAGAGGGCACATATGGAACTGTTTTCAAAGCAAAAAATAGAGAAACGCATGAAATCGTGGCTTTAAAAAGAGTGAGATTGGATGACGACGATGAGGGGGTCCCAAGTTCTGCCCTGCGAGAAATTTGCCTCCTGAAAGAACTGAAGCATAAAAACATTGTGAGATTGCATGATGTTCTGCACAGTGACAAGAAGTTAACATTGGTGTTTGAATTTTGTGATCAGGATCTAAAGAAATACTTTGACAGCTGCAATGGAGACCTAGATCCAGAAACTGTCAAGTCGTTCATGTACCAGCTGTTGAAGGGGCTTGCCTTCTGCCACAGTCGTAATGTTCTCCACAGAGACCTGAAGCCACAGAACCTCCTCATCAATAGGAATGGGGAATTGAAGCTGGCTGACTTTGGCTTGGCTCGAGCCTTTGGAATCCCAGTGAGATGTTACTCAGCAGAGgttgTGACGTTGTGGTATAGGCCCCCAGATGTGCTCTTCGGTGCTAAGCTTTATTCTACCTCTATTGACATGTGGTCTGCTGGATGCATATTTGCAGAGTTGGCAAATGCTGGAAGGCCCCTGTTTCCGGGTAATGACGTTGACGACCAGCTGAAGAGGATCTTCCGATTGTTGGGTACACCAACTGAAGAACAGTGGCAGACAATGACAAAGCTTCCAGACTATAAGCCGTACCCCATGTATCCAGCCACGACCTCACTGGTGAATGTTGTCCCCAAACTCAGTAGCACAGGACGGGATCTCCTGCAGAATCTGTTGAAGTGTAATCCTGTCCAGAGGATCTCTGCAGAGGAGGCATTACAACACCCTTACTTTGCTGATTTCTGCCCACCGTAGATGAGGTGCCCAAACACGTCACTCAACTGAACCTCCTCCATCAGAATCAATCCTCTTTCACTCCCATCTTCTCACCAGGATCTGTCTATCCCGACTCCCTACAAGGCTCATCCTTCAGCAGCACCTGTTTTGACTAAGACACTTCCCTTCACTTCATCCTGTTGTGCCTCCAAATGGAATCAAGTCCTTGTGGGCTCTGCAATATTTTAGATTTTGTTAGCAAACCTGTCTGCTTTTGTCTGTGAAGCGCACTGATATGGAAACATATAACATGTAGCGAATAACAAATCTGGACCCAGAGAAACCGTGAATCCTTCTGAGCCAATAGCTGCGCAGCAGAGTAAGAGGTTTGAACAATTGAAGTTGTGTGCTGCATAATGTACTGGCAAAATGTAGGTATTTGGATACATTGTTCAAATAGGTTTAATGTGCTACTGCTGTTGTCAATATTGCATTAATTGGTCATAAGATTGGAGACAGACTTGCATATTTCCCTTGTTCTTCATCATAGTTATAACAATATTCCACTTACAATAGGAGATTGTAAAATGGAGGGGAGGCATATTTATCAGTTACTTCTCAGGCTTGCTGTTTAGCTTTTTGTGTTTGAGTTTTTTTGTGCACTTTGTAAATGGCAGTTGCTTTTTTAATAGTTTAGATCTCATCTACTCTATAAAGTAAAGTTGAACACAAAGTCGGTATTGTCAAAGCTGGGGCCAACTGATATATTTTATGAACAGCTCAATACGAGCTTGAGTCATTGCTTTTATTTTATAGTTACATTTTTGTAACTTTGTACAATCTTTCATAATTGACCTAATCTCTTATAGCTTAAGAGAAAGTGAAGAGAGGAGGAAATCCACTGATACCTGTATTACCACATTATGATTGTTTTGCACCACTCTGACTTTGACTGTGTTCACTCAGATGGGTAACTTAATTTTGGCAAGGAACTAGCACATTTTTCAGTGTTATTTTACTCCAGCTACTTATCCCACAAAAGCCACAATTATAAGTAATCTACCAAAACATTGGTTTGCATGGATAGGGGAAATGTGTGTTTTGATGATGTAAGATGACAAGCAGAATGCATGTATTTATTGATCATTGAATGTCTGCTTATGTGTGCATTGTCTTTTTTTCTATCAAACAAATTACTTTCAGGAGTTGTATTTGCTCTTCTTATTCAAATAATAACATTTGTGACACTTAGTTCCATGTCATTTTTACTGCTCTTTATAGTGTGCATTGATGTTTGCATCTGAGTTGAGATTCAATTCCATTATCACATGCAGatatgttggatcttaatttgaccagtttctcacagcagaaaATGTGAATttttgtgtggattataattaatagaCATTTTTGTAGAGTTTGATACATTTTTAGATggtgcaaatcaagtctgacattttaaagtgaaaattgCAAACTTTAGAAtccttttaaacctcaaatacactacaagtttgcatttcctgccgtGCAGGAAATTTCCTGCAATGGGGTGataaaattaagatcctacatctgtaaagaCAAGCAATTCCAGTGCTTATTTTTTAGACAAGACTGCTGTAGATTATTAGTTTAAATATGACTCATTTCTATTTTGAAAGAAGAGTGGACTTTGCACTTTTATTATTATCATTGTTTTATTGTAAAACTTGGGTCAAGTATTTAGACAATTGCTGTCAGCAGTGGTCTTTTTGTGTACATTTTAAAACACAATGGTTCAGTAATTCAATAAAGTGGactcaacatttt

Function

NR:

description
PREDICTED: cyclin-dependent-like kinase 5

GO:

id name namespace
GO:0021634 optic nerve formation biological_process
GO:0007049 cell cycle biological_process
GO:0016572 histone phosphorylation biological_process
GO:0051301 cell division biological_process
GO:0021954 central nervous system neuron development biological_process
GO:0048935 peripheral nervous system neuron development biological_process
GO:0010842 retina layer formation biological_process
GO:0043524 negative regulation of neuron apoptotic process biological_process
GO:0060059 embryonic retina morphogenesis in camera-type eye biological_process
GO:0050321 tau-protein kinase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0004693 cyclin-dependent protein serine/threonine kinase activity molecular_function
GO:0035173 histone kinase activity molecular_function

KEGG:

id description
K02090 CDK5; cyclin-dependent kinase 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021613581.2 True 2815 mRNA 0.39 12 71641430 71649971

Neighbor

gene id symbol gene type direction distance location
zgc:92591 LOC105019623 coding downstream 178843 71461083 ~ 71462587 (-)
LOC110530476 LOC106569351 coding downstream 204693 71434344 ~ 71436737 (-)
LOC118965547 LOC106610709 coding downstream 244814 71394099 ~ 71396616 (-)
LOC110530974 LOC106569121 coding downstream 529406 71092167 ~ 71112024 (-)
LOC110530472 NA coding downstream 558164 71020813 ~ 71083266 (-)
abcb8 LOC106569347 coding upstream 3780 71653751 ~ 71659992 (-)
LOC118936275 LOC100136187 coding upstream 45731 71695702 ~ 71697473 (-)
LOC100136187 LOC100136187 coding upstream 55025 71704996 ~ 71706543 (-)
LOC110530481 LOC100136187 coding upstream 63789 71713760 ~ 71716272 (-)
LOC118936258 guk1 coding upstream 168449 71818420 ~ 71829182 (-)
G743396 NA non-coding downstream 631 71639714 ~ 71640799 (-)
G743394 NA non-coding downstream 2885 71580475 ~ 71638545 (-)
G743401 NA non-coding downstream 54601 71586334 ~ 71586829 (-)
G743302 NA non-coding downstream 194752 71445721 ~ 71446678 (-)
G743275 LOC106569352 non-coding downstream 229177 71408929 ~ 71412253 (-)
G743425 NA non-coding upstream 9170 71659141 ~ 71659396 (-)
G743442 NA non-coding upstream 15076 71665047 ~ 71665840 (-)
G743443 LOC106569346 non-coding upstream 16192 71666163 ~ 71666892 (-)
G743444 NA non-coding upstream 17017 71666988 ~ 71668558 (-)
G743420 LOC106569346 non-coding upstream 26548 71676519 ~ 71676751 (-)
G743076 NA other downstream 570348 71070634 ~ 71071082 (-)
G742383 LOC106569128 other downstream 798973 70835358 ~ 70842457 (-)
G742038 NA other downstream 1115479 70519387 ~ 70525951 (-)
LOC110530449 NA other downstream 1441152 70198887 ~ 70200278 (-)
LOC110530971 NA other downstream 1480592 70148848 ~ 70160838 (-)
G743421 NA other upstream 25474 71675445 ~ 71675785 (-)
G743447 NA other upstream 28714 71678685 ~ 71682299 (-)
G743450 NA other upstream 35219 71685190 ~ 71715625 (-)
G743961 NA other upstream 527613 72177584 ~ 72177867 (-)
G744129 NA other upstream 674221 72324192 ~ 72324992 (-)

Expression


Co-expression Network