G743394


Basic Information

Item Value
gene id G743394
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 71580475 ~ 71638545 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU843923
AAATATATAGTTTATTATATTTGATAATTTACACATCACAAACTGACTGTTAAGTTAGTCTTATTACATGTACTGGAATTCCAATAACAATAGTATATAACAATGCAATTATACAATGCATTTTAGTGTTTTAAACCAACTGAACTGAGTAAAGTAGGGAACCTGGGACATGTATGTTTTTGAAGCACTGTATTAAACTGCCTCTGGTATCTAACAAATTCTACTCTTGTGTCCGGTCCTAAAATTAAATAGAAGCTGGAAGACACTTGAGGTCCACTTGGATAACAACACAAACTAATGGACAACTCTTGGGGTAGGCCATTGTGTGCTCGTATGGTAAGTCTGCAGCTCCCTTGTCCTCCAATTCCCTTATGGTGCAACAGCAGTAAtggatacatttttttgtctttttttttttttacatactatAAACATATCAACATATGAGCGAGATTGAATTTCTTAATGGCATTTTGATCTGGTatttacacttttcaatcaataTTTAGAACACCACCTTGACAATGTTTGTACTCCACTAGTTTCCAATAGAGAATAGTTTACGATCACAGGGGACTTGTGCTAATGAGTGTTTTTGTAGCAGTTAAAAGCCATGGTCATGGAACAAAATTGAACAACACCCACATAAACTAACTTTAAGTTTGGTGGATCATCTTGCTTGTTTGTCTATTCTATTGAAAGTGGTGATTAAGAGGGGGGCTGAGTTACAGCAGACTCCTGTGAAGAGTGTCCATTTCCAGTGACAGTACGGTCAGTACGACAACTCTTTTCCCAGAAAAAATGGGAAAACACGACAGAAGAAAATGTTGTCATTGATGTACATTTTTTCAGCAGTAAGCAGATAGAAAGTATGTGGAGCACTATATATAACAACGGAAATGTTCCTATTTTCCCCAAATCTCATGGAAAAGTTGTGATTGTTCATATGTGAAAACATAAACACTTTTTTTCTATTTTCCAATATGTCACTTGTAAACAAAGAATTGCATTCAATTATCTTGCAATAGTTTAACTTCCGGGGACCTAACGCGAGAGGCTTTCATTACTTGATGGTTTATAGTTTCAAATCAGTGATAGGATCAATCTCTGAACAGAATCATTTGAGTACGAAGGCAGCACAATTACTGCGAACTGTCTATTACTGGGGGGTTCAAGTTAGGTCTGCTGTTCTCCTTTGAGCATTGTGATCATAGTTGAGTGGGCATCACTGAAATCTGCATTCTCTTACTCTCAATTAGTTATAAATGAAAGAGTGGTAACATGAATATGTCTTTAAAACCCCTCTTGATTCTACTAATGAATGGACCTGGCTATGCTGATGCTACACATGCTAACCATGGCTAGCCTCTCAATTTGATATTCAGCACACCAGAACTGActgctacactgaacaaaaatatgaatgcatcatgtaaagtgttggtcccaagtttcatgagctgaaataaaatatccaataaatgttccatacacacaaaaagcttatttccctcaaattgtgtgcacaaatttgtttatatccctgttagtgagcgtttctcttttgccaagataatccatccccctgacaggtgtagcatatcagttatctgactaaacagcatgatcattacacaggtgcatcttctgctggggacaataaaaggccactctaaaatgtgcagttttgtcacacaacacaatgccacagatgtctcaagttttgaggcagcatgcaattggcatactgactacTGGAATgctcaccagagctgttgccagagaactgaatgttaatttctctaccataagcgttgtttcagagaatttggctgtacatccaaccagcctcacaaccgcagaccacgtgtatggcgttgtgtgggtgagctgTTTTCTGATGACGTTGTgagcagagtgccccatggtggtggtggtggggttatggtttgggcaggcaatgaacacaattgcattttatcgatggtaatttgaatgtacagagttaccgtgacgagatcttgaggcccattgtcgtgccattcatccgccacaaACTCCTCATGATTCAGCATGATAACGCACGGCTCTATGTCGCAAGGACctgcacacaattcctggaacctgaaaatgtcccagttcttccatggcctgcatactcaccagacatgtcacccattgagcattttTTGgcatgctctggattgacatgtacaGTTCCTATGAATTTTCAGCaacttcccacagccattgaagaggagtgggacaacaatgaacaggtcacaatcaacagcctgatcaa

Function

NR:

description
Transposable element Tcb1 transposase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU843923 True 2302 lncRNA 0.39 2 71580475 71638545

Neighbor

gene id symbol gene type direction distance location
zgc:92591 LOC105019623 coding downstream 117888 71461083 ~ 71462587 (-)
LOC110530476 LOC106569351 coding downstream 143738 71434344 ~ 71436737 (-)
LOC118965547 LOC106610709 coding downstream 183859 71394099 ~ 71396616 (-)
LOC110530974 LOC106569121 coding downstream 468451 71092167 ~ 71112024 (-)
LOC110530472 NA coding downstream 497209 71020813 ~ 71083266 (-)
LOC110530478 LOC106599847 coding upstream 2885 71641430 ~ 71649971 (-)
abcb8 LOC106569347 coding upstream 15206 71653751 ~ 71659992 (-)
LOC118936275 LOC100136187 coding upstream 57157 71695702 ~ 71697473 (-)
LOC100136187 LOC100136187 coding upstream 66451 71704996 ~ 71706543 (-)
LOC110530481 LOC100136187 coding upstream 75215 71713760 ~ 71716272 (-)
G743302 NA non-coding downstream 133797 71445721 ~ 71446678 (-)
G743275 LOC106569352 non-coding downstream 168222 71408929 ~ 71412253 (-)
G743129 NA non-coding downstream 385819 71175950 ~ 71194656 (-)
G743110 NA non-coding downstream 446504 71133762 ~ 71133971 (-)
G743108 NA non-coding downstream 447514 71132688 ~ 71132961 (-)
G743396 NA non-coding upstream 1169 71639714 ~ 71640799 (-)
G743425 NA non-coding upstream 20596 71659141 ~ 71659396 (-)
G743442 NA non-coding upstream 26502 71665047 ~ 71665840 (-)
G743443 LOC106569346 non-coding upstream 27618 71666163 ~ 71666892 (-)
G743444 NA non-coding upstream 28443 71666988 ~ 71668558 (-)
G743076 NA other downstream 509393 71070634 ~ 71071082 (-)
G742383 LOC106569128 other downstream 738018 70835358 ~ 70842457 (-)
G742038 NA other downstream 1054524 70519387 ~ 70525951 (-)
LOC110530449 NA other downstream 1380197 70198887 ~ 70200278 (-)
LOC110530971 NA other downstream 1419637 70148848 ~ 70160838 (-)
G743421 NA other upstream 36900 71675445 ~ 71675785 (-)
G743447 NA other upstream 40140 71678685 ~ 71682299 (-)
G743450 NA other upstream 46645 71685190 ~ 71715625 (-)
G743961 NA other upstream 539039 72177584 ~ 72177867 (-)
G744129 NA other upstream 685647 72324192 ~ 72324992 (-)

Expression


Co-expression Network