iba57 (iba57)


Basic Information

Item Value
gene id iba57
gene name iba57
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 72103148 ~ 72105382 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021613626.2
GTAAATGCACGCAGTGCAttgtgggattcaaaatggagTTTGTTATCAAGATGTCAGTTGAAACGTCCCGTCTTGGACTTATTTAAcgaatttaatttaattgtctAGTTGCTGTTTTTCGCACACGTACCAAACAATGCACTGTATGGGATTGGTTTGTTTCGCTAGGGCCGCGGTTGGTCCAAACTCTTTTCTTCGACTCTACTCACGCAATTTCAATGCTAGAAAATGTTCCGAACGCCGGTACCAGTGGACAAGTGCTTGGTGCCCAGCAGGATGGACCAACATCAATAATTACAGTCAGGAAGCACGTAAGAATGAATTGGGACAGTATGTTTGCTATCATCTTCCACACAGGACCTTAATGAAAGTTCAAGGGCAAGATACAAGATCGTTTCTTCAAGGTATTGTAACCAATGACATGGAGCTCTTTGCAAAAGAGGAACAGAACGTTTTGTATGCGCACATGCTGAACGTTCAAGGAAGGACACTGTATGACATTATCATATACAGgtTGAAAGTAGCAGAAGCGGGTTGTGGTGTTCTGGTCGAGTGTGACACCACCATAAAGGATGTAATTTTGAAACATTTGAAGGTGTACAAAATCCGCCGGCAGGTGAAGATCAGCACCTGTCCAGAGCTTTCTCTATGGGCTGTTTTGCCTCAGGGAACAGCCCCAGGCCACAAGAGGCCTAAGCCAGATCTCACTGCCCCAGAAAAAGCTCTGATGTGGGAGGAAGATCCGAGAACTGAAGCCATGGGCTGGAGGTTGGTGGTGGACAACGAAGTCGATCCTCTGGAAATGATTCCATGGTGTCAGCAAGGCAACTCCGAAGAGTACCACAGGCACCGCTATGCAATAGGACTTCCTGAGGGGGTGAAGGACCTTCCTCCCGGGGTGGCTCTTCCTCTGGAGTCCAACCTGGTCTACATGCAGGGCATCAGCTTCAGTAAGGGCTGTTACATTGGCCAGGAGTTGACCGCCAGGACTCATCACACCGGGGTGGTGCGGAAGCGCCTGATGCCTGTACGCATGTCAGCACCAGCCGAAGGCCTGGAGGAAGGAGTATCGCTACAGACCCAGTCTGGCAAGCCAGCCGGGAAGCACAGGGCCGGGGTTGGAGAGCTGGGCCTGAGCCTGATCCGCCTGGCTCACGCTAAAGAGCCACTGACACTCAAGGCGTCAGAGGACACCACAGTGACTCTAGAGGCCTCCGTGCCAGACTGGTGGCCCAAAGACACGAAAGCAAAATGAGGATAGAAGTATTTATTGACCCCAACAATATGAAACGTACATTTGTTCAAAAGAGCCATATAATTTCTTCATGGATTTCTACACGTCCATAGTTACATCTTCTCTTTCCAAATTCATCTAATACAGTATTTCACTGGTACCACTAGCAGCCATGTCTGACAATAGTTTTACTTTGTTTGCAATATTGAAATTGCTTTAGATAGACTCTGAAATTATAATTTCAGAGTCTATCTTCCTTAACTATGCTGTTTGCCAGTTGTGCACCATAATTTACTAGCTATTGTCATAAATATTACTATGCATCTCTGGTGTAATAAACATATAAGGACACAAA

Function

symbol description
iba57 Acts upstream of or within heme biosynthetic process. Is expressed in intermediate cell mass of mesoderm. Human ortholog(s) of this gene implicated in hereditary spastic paraplegia 74 and multiple mitochondrial dysfunctions syndrome 3. Orthologous to human IBA57 (iron-sulfur cluster assembly factor IBA57).

NR:

description
PREDICTED: putative transferase CAF17, mitochondrial

GO:

id name namespace
GO:0006783 heme biosynthetic process biological_process
GO:0006546 glycine catabolic process biological_process
GO:0032259 methylation biological_process
GO:0005737 cytoplasm cellular_component
GO:0004047 aminomethyltransferase activity molecular_function

KEGG:

id description
K22073 IBA57; transferase CAF17, mitochondrial

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021613626.2 True 1589 mRNA 0.47 3 72103148 72105382

Neighbor

gene id symbol gene type direction distance location
snap47 LOC106569337 coding downstream 5858 72081880 ~ 72097290 (-)
LOC110530975 wnt3a coding downstream 218606 71855465 ~ 71884542 (-)
arf1 arf1 coding downstream 265465 71835737 ~ 71837683 (-)
LOC118936258 guk1 coding downstream 273966 71818420 ~ 71829182 (-)
LOC110530481 LOC100136187 coding downstream 386941 71713760 ~ 71716272 (-)
gjc2 gjc2 coding upstream 6869 72112251 ~ 72133973 (-)
LOC110530492 LOC106569335 coding upstream 30301 72135683 ~ 72138188 (-)
LOC110530493 LOC106569333 coding upstream 43684 72149066 ~ 72151039 (-)
LOC110530495 LOC106569329 coding upstream 131949 72237331 ~ 72308215 (-)
LOC110530497 LOC106569328 coding upstream 244753 72350135 ~ 72416525 (-)
G743879 NA non-coding downstream 47820 72030437 ~ 72055328 (-)
G743738 NA non-coding downstream 76367 72026547 ~ 72026781 (-)
G743689 NA non-coding downstream 116444 71986503 ~ 71986704 (-)
G743687 NA non-coding downstream 116907 71986025 ~ 71986241 (-)
G743665 NA non-coding downstream 131732 71971158 ~ 71971416 (-)
G743948 NA non-coding upstream 41915 72147297 ~ 72147666 (-)
G743912 LOC106569334 non-coding upstream 45728 72151110 ~ 72155427 (-)
G743952 NA non-coding upstream 55434 72160816 ~ 72161017 (-)
G743972 NA non-coding upstream 85027 72190409 ~ 72190621 (-)
G743973 NA non-coding upstream 87578 72192960 ~ 72193173 (-)
G743450 NA other downstream 387523 71685190 ~ 71715625 (-)
G743447 NA other downstream 422871 71678685 ~ 71682299 (-)
G743421 NA other downstream 427363 71675445 ~ 71675785 (-)
G743076 NA other downstream 1032066 71070634 ~ 71071082 (-)
G742383 LOC106569128 other downstream 1260691 70835358 ~ 70842457 (-)
G743961 NA other upstream 72202 72177584 ~ 72177867 (-)
G744129 NA other upstream 218810 72324192 ~ 72324992 (-)
G744608 NA other upstream 589666 72695048 ~ 72720467 (-)
G745300 NA other upstream 1275919 73381301 ~ 73381701 (-)
G745292 c8 other upstream 1280270 73385652 ~ 73391433 (-)

Expression


Co-expression Network