G743912 (LOC106569334)


Basic Information

Item Value
gene id G743912
gene name LOC106569334
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 72151110 ~ 72155427 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU844511
gataatttgtatttatttcacacaCTATTGTTGATGAATATGTTCCAGTGCACTCAACATTGGGAGAGAATGACTTATAACATAGATGGGTAAAATTTCAGCAGTTTGTAGACAATAATGCCTTAAATGCAGTTCCATCAAAGTTATGATTATAGGCCTACTGCCCAGTACTTACTCTGTATAAACAATTCAGCCATTAGCTGTGTGAGACCATTTTCTTAGAATATCAATTTATTAAGGTTCTATCAGAAAACAAAAATCACATAAGGATCTCTTTTGAGATCCTGATTTAGGTAGTCCGAGTGCCAGACCTAATAGAGTGTGTTAGCCTCTCCTATTTTCAGGTCACAGGTCACTACCACCTATTAGGGTGATGCTTTATTGCACTCATAAGTAAAGGCCATTTGACAATAGTAAGGTGCAACACATTTTTCATTGGTAAAATACAATACATAAAGATTTACTATGCAGAAATCGCAAAAATTCCAATAGTTTGtccaatttcagtttgtgacaaaacaagcaagtatagtgtagagaatcattgtacatTCTAAACTtctgtgaaatgtattttcaCATAGGCAAAAATATTGTatgttcagctgtttgaagctggtgcacaaaaccgaaagtaaaagtcacaaaaatgaaacttaaaagtggaaagcatagaaatagtgcacatagaacagatctacagctAGACTTGCTGTCAATGAGTGACATATCGAttactcacatttctatgtgaattttgtcAGGTCACTCAAAAAGTTACACATCGCAGCTTTAATAATAGAGTGAATCTAAATAATGTAATAATCAaccaataaaataaaacaaatacaataaaataccCTTCAAAGGAAATCCAGAAAAGCATTCAGTGACGATTGGAATAGTGGTGGTTGAGCAAGACCTGTGTCCTAATAACAGCTGGCTGTCTTGTACCAACACAGTCACTTCAACTCAAACTACCCAATATCCTTTGCTGATCCAGAGCATGTTATATAGCCCTCAAACTCAAAGCCAGTTTCACTGTATTTTTTAATTGTTCCCCTTTAATCAGAGGCTGGGACAATAGGTGCATGCAATTAATTGTCAGGTAGAATAGAACCAGCAGGCTTCGGATCTCGTAGGGTAAGAGTACCCGTTTTATAGCATCAAATGGCTGTTTGCTCCTCATTTGATAACCAGATGTAACTAACATCCAATAAATATTTCATACAACATCCTGTGACCTATCCCAAAATATTGTTCTCCTAAaatctaaaaaatgtttttttagaaTGTGAGTTTCCATTACCAATTGTCCTCTAGTCAACCACGTACCTTCAACAGACTTGCATTCACAATAATCTCATACGTCATGTTTTGTGTGTCACTAAGATGCAATACCATCTCAGGTAGTTACAGTTGGCTCATATCTATGTCTCATCAAAGTGACAACCCtcaggaaacacacacattttGAGGATATGGAGACTCAAAACTGAGTTGAGGTAAGGCATGGCATCTTCGTCTAAAAAGAGTGCAGTAGACATTCTTGGTGAGTGAGAATTCCTTAAAACTACCTAGTACATTAACAGGTGTGTTATATGTGGGAAAGGTGTAGATATACAATTTATGGCAAACTGAGGTAATATTAAGGGGACATACAAAATATCAATCCAAAAGAGTCCATATTCATTTATCAGGTTATTTGTGTTGAAATGCAGTCTGCTGTTGCAATGCCTTCAGTTCTTCTCTTGGCTTCACAATGTAGTCTTTGTACATGGAATAAATGACACCAATAGTCATAGCTCCCACCACGAATCCTTGGGCCATAACACGCATGTGGATAAGGTGCACTGACATCTTCATGTCTCCACGGCTCTTCAACTTGTAAAGTCTGTAGCCCACAATGGAAAAGAATCCTGCcattcCTATTGGGACAAAAGGATTCTCCTTCACCTTTCGCATAAACTTAGATTCTTCTTCATCATATGCAGACATCTTGGCGTTTTGTCAAACTTCTATTGAAGATAATGGATCCGGACTGATTATGTATGCGCTACACACCAAATAGACAACGCGCTGTCCTTACATCGAGCTACTCAAACAGCAGTCCAAAATTAAGTAACATTTTCACACACGTGACGTAGGCTGTCTTTTTCCATTGAATTATCTCACACGTTTAGCCAATAAAAACCTCTCAAcctttttaaattaatttgttcaatcTCTTGATTATTATCCCTTGTTAATGGTACATTTTATTATGGCCTTTCCCTGGAAAATAATAAACTCGAGTTGCAAATAAACTAAATCGTTCCCAGAATAAAATCTGTATGAATTGTAGTTCGGGGGGAATTACAAAATCGGTTTTGACGGAGCATATACCTCCAAAAAAACGTGTTTAATTCCATGATATAcacatgtgtatgtatgtatttaagGATCAGagtatacatttatttttgagCTACTTACATTTTAAACGTCG

Function

NR:

description
HIG1 domain family member 1A, mitochondrial-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU844511 True 2488 lncRNA 0.36 4 72151110 72155427

Neighbor

gene id symbol gene type direction distance location
LOC110530493 LOC106569333 coding downstream 71 72149066 ~ 72151039 (-)
LOC110530492 LOC106569335 coding downstream 12922 72135683 ~ 72138188 (-)
gjc2 gjc2 coding downstream 17137 72112251 ~ 72133973 (-)
iba57 iba57 coding downstream 45728 72103148 ~ 72105382 (-)
snap47 LOC106569337 coding downstream 53820 72081880 ~ 72097290 (-)
LOC110530495 LOC106569329 coding upstream 81904 72237331 ~ 72308215 (-)
LOC110530497 LOC106569328 coding upstream 194708 72350135 ~ 72416525 (-)
LOC110530500 LOC106569325 coding upstream 400206 72555633 ~ 72562473 (-)
LOC110530503 LOC106569322 coding upstream 407875 72563302 ~ 72634023 (-)
LOC110530505 NA coding upstream 482286 72637713 ~ 72639354 (-)
G743948 NA non-coding downstream 3444 72147297 ~ 72147666 (-)
G743879 NA non-coding downstream 95782 72030437 ~ 72055328 (-)
G743738 NA non-coding downstream 124329 72026547 ~ 72026781 (-)
G743689 NA non-coding downstream 164406 71986503 ~ 71986704 (-)
G743687 NA non-coding downstream 164869 71986025 ~ 71986241 (-)
G743952 NA non-coding upstream 5389 72160816 ~ 72161017 (-)
G743972 NA non-coding upstream 34982 72190409 ~ 72190621 (-)
G743973 NA non-coding upstream 37533 72192960 ~ 72193173 (-)
G743974 NA non-coding upstream 38131 72193558 ~ 72194000 (-)
G743979 NA non-coding upstream 46323 72201750 ~ 72202027 (-)
G743450 NA other downstream 435485 71685190 ~ 71715625 (-)
G743447 NA other downstream 470833 71678685 ~ 71682299 (-)
G743421 NA other downstream 475325 71675445 ~ 71675785 (-)
G743076 NA other downstream 1080028 71070634 ~ 71071082 (-)
G742383 LOC106569128 other downstream 1308653 70835358 ~ 70842457 (-)
G743961 NA other upstream 22157 72177584 ~ 72177867 (-)
G744129 NA other upstream 168765 72324192 ~ 72324992 (-)
G744608 NA other upstream 539621 72695048 ~ 72720467 (-)
G745300 NA other upstream 1225874 73381301 ~ 73381701 (-)
G745292 c8 other upstream 1230225 73385652 ~ 73391433 (-)

Expression


Co-expression Network