gjc2 (gjc2)


Basic Information

Item Value
gene id gjc2
gene name gjc2
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 72112251 ~ 72133973 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021613628.2
GTGAGGCATTCACAGGAGAAATAGTTCAGTTCCGTCCTCACTCAGTGGATAAacagaaaagagagaggatagaCAGAAAATGCTGTAATAACATATAGTCTTATTATAAGATGTTTGATGTTTTTACTATGTGGGGAAGCTAATGTTGTTGTTAGCTAGTGGGGGTCACGGCATCAGATCAGGATCAGGATCAGGATCAGGATGGACCCTCCATGCCATTGCTGTTGTGGAGACTATGCACGGGAGCTCTAGAGATGGCCGTGGAAATGTGGACAAAGTTATGTTTGAACAGAGCGTGCGGTGCAACTTCTTCTCCAGATTCTAGTTGAAAAGCCTCTATGACCACCATGAGCTGGAGCTTTCTAACTCGTCTTCTGGAAGAGATCCACAACCATTCCACCTTTGTGGGGAAAGTGTGGCTCACAGTACTCATCATATTCCGTATCGTGCTGACTGCCGTGGGGGGCGAGTCCATCTACTCGGACGAGCAGACCAAGTTTACCTGCAACACCAAGCAGCCCGGCTGTGACAACGTGTGCTATGATGCCTTCGCTCCGCTTTCGCATGTTCGCTTCTGGGTCTTCCAGATCATCATGATCTCCACCCCCTCTGTCATGTACCTGGGCTATGCCATACACAAGATAGCCCGCGCTTCCGAGGTGGAGCGCCGGAAGTTCCACCGCCGGAAGAAGCCCATTCAGGCCCACAGGTGGAGGGAGAGCCACCCGCTTGAGGAGGTGCTGGAGAATGAGGACGATGATGCAGAGCCCATGATCTACCAGGAGGACGTGGTGGAAGTCCAGGAGGTCAAGCTGGAGCCGGCCAAGCCGCAGAAACATGACGGCCGCCGGCGGATCATGCAAGAGGGCCTGATGAGGATCTACGTTCTGCAGCTTCTGTCCCGGGCTGTATTTGAGATTGGCTTCCTGGTGGGCCAGTATCTTCTCTATGGCTTCCATGTTAATTCGTTCTATGTGTGCAATAAGGTGCCCTGTCCCCACAAGGTAGACTGCTTCATCTCTCGGCCCACAGAGAAGACCATATTCTTGCTCATCATGTACGTGGTCAGCTGCCTCTGCCTGCTCCTTAATGTTTGCGAGATGTTCCACTTGGGTATCGGAAAGTTCCGGGACACTCTCCGCAAGAGGAGGAACCAGGGGGGGCGACGGACATCGTACAGCTACCCGTACTCCCGTAACATCCCCACCTCTCCCCCCATGTACAACCTGGTCATGAAGTCAGACAAGCCCAACAGGATCATCCCCAACAGTCTTATCACCCACCATGAGAAGAACATGGCCAACAATGCCCTGGAACATCACCAAGAGTGCACCAGTCCAGACGAGAACATCCCCTCAGACCTGGCCAGCCTGCACCGCCACCTACGGGTGGCCCAAGAGCAGCTTGACATGGCTTTCCAGACCTACAATACTAACAAGAACCAGCCCACCTCCAGGACAAGTAGTCCAGTGTCTGGGGGCACCATGGCAGAGCAGAACAGGGTCAACACAGCCCAGGAGAACCAAGGAGCCAGGCCGAAATCAGCCACTACAGAGAAAGCTGCGACCATTGTAAAGAACGGAAAGACTTCTGTGTGGATTTAAGAATGATTAACTTCACGTGGTACAGTAATCATTCTGAAAAGCCATTTTTCAATTTCCAGGACCATATTCTGTGGATACTGGAAGATGTGTGAGATGAGACAAGATATTAAAGGCTTTGGTGCATGAATCGATTGCACTGCCCGAATACACTGTAAAAAGTACAATTTCATTCAACATACAATTGTAAGGCAACCAGCTGCAATAGGATTGTGAGTTTGCTAAACAACATTTTCACACACAAGCGTTTTGTTGTGAGTTTGCTCAACAACATGTTTGTTGGGCAAACTCACAATCCTACTGTACGTTGAATCAACATCTTTTTTCTTTTTACAATATAGATTTAACTTTTGTCACCAACAGAAACCAGCAGTGTGACATGTCGGATCAGGAGCACACAAAATAGGCACATTGTGACCTCAGAACAATagtaaacaatttttttttaaacaaacaaacaaacaaatacagtagTATGGATCATATTATTAGTAGGTTATTGTGTGCTTTAAATGCCATAGCCTGAACATAATTAATATATGCATATGTTGCTTAGTCAAACTTTTATAATTTTTGCGATTTATAGGGAGATATAAAATAAACCATGCTGGCAATATAATTTTACCCTAGCTATTGAACTGGATtaatttgaaaaaaaatatttataatgGTTTTAACTATAACAATTGTGGCCTCGTTAGCCTAGTTAAAAGCAATGCAGTGGTAAGCACTGTTTAATGGTACTATGCTTGAATCATGATGCTTGAAAAATGGACAGTCAACCAAATGtgaagatttttttgttgttgagaaatTCAGAACTGTTCAGATTTGCACTTGTAACGTTTTAACTCATTTTGAGTTGTATTATGACATTTAGAGAAATGATGCATGAATAATTTATTTGTTTAAGAAATTTTGGATGTAGTTAGTATAGGTTTTGTTGAAAGAAGAGATGTGACATGTTATGGAACAAATGGTGTTCCATCAGCAGCAAAGATTTGAGCTACACTGTTCTCCATAAAGTCATATTTTAATTCACTCCACTTCTCAAAGCTTTGTCACGTTAGGCATTGTCGGAATAAATTAGTTAAAGAAGAAAAAGGTAAGTTGTTGTATTGAAAACTTACCGTAAACCAATTTCTGATCATTTCTGATGTTTTTGTGGGGCATATAATGCATGCTACATTTTCACACATATGACATATACAATACAATGTACATAGTCAAAAATCTATCCTCATAAAGTTGACTCCATATATTCCTATATTTAGGAATCTGTCTTGAATCAAGTAGTTTTCTGCATTGTTTTCATAGTATATACATAATTCTGCCTTTAGCATTATGATACTCCAGTCCAAAGTGCCTCAAACGGTTAAGATTGTTCCTGTGTTtaattcaaaaataaataaacctaGATTATGTGTGTCTCTAATTATATGtcattgtatattgtatattgtatgtgaaaggggatacctagtcaaataaaatgttatttgtcacatgcgctgaa
>XM_021613627.2
GAACCTCAGCAAAGCTGAGCAATGTCTCTGGAAGTCGTCCCAGGATGCTCCACTGTGAAGAATACTAGTCTGGTCAAACCTAGCTGGCCCCATGGAGAGATTCTAGTTGAAAAGCCTCTATGACCACCATGAGCTGGAGCTTTCTAACTCGTCTTCTGGAAGAGATCCACAACCATTCCACCTTTGTGGGGAAAGTGTGGCTCACAGTACTCATCATATTCCGTATCGTGCTGACTGCCGTGGGGGGCGAGTCCATCTACTCGGACGAGCAGACCAAGTTTACCTGCAACACCAAGCAGCCCGGCTGTGACAACGTGTGCTATGATGCCTTCGCTCCGCTTTCGCATGTTCGCTTCTGGGTCTTCCAGATCATCATGATCTCCACCCCCTCTGTCATGTACCTGGGCTATGCCATACACAAGATAGCCCGCGCTTCCGAGGTGGAGCGCCGGAAGTTCCACCGCCGGAAGAAGCCCATTCAGGCCCACAGGTGGAGGGAGAGCCACCCGCTTGAGGAGGTGCTGGAGAATGAGGACGATGATGCAGAGCCCATGATCTACCAGGAGGACGTGGTGGAAGTCCAGGAGGTCAAGCTGGAGCCGGCCAAGCCGCAGAAACATGACGGCCGCCGGCGGATCATGCAAGAGGGCCTGATGAGGATCTACGTTCTGCAGCTTCTGTCCCGGGCTGTATTTGAGATTGGCTTCCTGGTGGGCCAGTATCTTCTCTATGGCTTCCATGTTAATTCGTTCTATGTGTGCAATAAGGTGCCCTGTCCCCACAAGGTAGACTGCTTCATCTCTCGGCCCACAGAGAAGACCATATTCTTGCTCATCATGTACGTGGTCAGCTGCCTCTGCCTGCTCCTTAATGTTTGCGAGATGTTCCACTTGGGTATCGGAAAGTTCCGGGACACTCTCCGCAAGAGGAGGAACCAGGGGGGGCGACGGACATCGTACAGCTACCCGTACTCCCGTAACATCCCCACCTCTCCCCCCATGTACAACCTGGTCATGAAGTCAGACAAGCCCAACAGGATCATCCCCAACAGTCTTATCACCCACCATGAGAAGAACATGGCCAACAATGCCCTGGAACATCACCAAGAGTGCACCAGTCCAGACGAGAACATCCCCTCAGACCTGGCCAGCCTGCACCGCCACCTACGGGTGGCCCAAGAGCAGCTTGACATGGCTTTCCAGACCTACAATACTAACAAGAACCAGCCCACCTCCAGGACAAGTAGTCCAGTGTCTGGGGGCACCATGGCAGAGCAGAACAGGGTCAACACAGCCCAGGAGAACCAAGGAGCCAGGCCGAAATCAGCCACTACAGAGAAAGCTGCGACCATTGTAAAGAACGGAAAGACTTCTGTGTGGATTTAAGAATGATTAACTTCACGTGGTACAGTAATCATTCTGAAAAGCCATTTTTCAATTTCCAGGACCATATTCTGTGGATACTGGAAGATGTGTGAGATGAGACAAGATATTAAAGGCTTTGGTGCATGAATCGATTGCACTGCCCGAATACACTGTAAAAAGTACAATTTCATTCAACATACAATTGTAAGGCAACCAGCTGCAATAGGATTGTGAGTTTGCTAAACAACATTTTCACACACAAGCGTTTTGTTGTGAGTTTGCTCAACAACATGTTTGTTGGGCAAACTCACAATCCTACTGTACGTTGAATCAACATCTTTTTTCTTTTTACAATATAGATTTAACTTTTGTCACCAACAGAAACCAGCAGTGTGACATGTCGGATCAGGAGCACACAAAATAGGCACATTGTGACCTCAGAACAATagtaaacaatttttttttaaacaaacaaacaaacaaatacagtagTATGGATCATATTATTAGTAGGTTATTGTGTGCTTTAAATGCCATAGCCTGAACATAATTAATATATGCATATGTTGCTTAGTCAAACTTTTATAATTTTTGCGATTTATAGGGAGATATAAAATAAACCATGCTGGCAATATAATTTTACCCTAGCTATTGAACTGGATtaatttgaaaaaaaatatttataatgGTTTTAACTATAACAATTGTGGCCTCGTTAGCCTAGTTAAAAGCAATGCAGTGGTAAGCACTGTTTAATGGTACTATGCTTGAATCATGATGCTTGAAAAATGGACAGTCAACCAAATGtgaagatttttttgttgttgagaaatTCAGAACTGTTCAGATTTGCACTTGTAACGTTTTAACTCATTTTGAGTTGTATTATGACATTTAGAGAAATGATGCATGAATAATTTATTTGTTTAAGAAATTTTGGATGTAGTTAGTATAGGTTTTGTTGAAAGAAGAGATGTGACATGTTATGGAACAAATGGTGTTCCATCAGCAGCAAAGATTTGAGCTACACTGTTCTCCATAAAGTCATATTTTAATTCACTCCACTTCTCAAAGCTTTGTCACGTTAGGCATTGTCGGAATAAATTAGTTAAAGAAGAAAAAGGTAAGTTGTTGTATTGAAAACTTACCGTAAACCAATTTCTGATCATTTCTGATGTTTTTGTGGGGCATATAATGCATGCTACATTTTCACACATATGACATATACAATACAATGTACATAGTCAAAAATCTATCCTCATAAAGTTGACTCCATATATTCCTATATTTAGGAATCTGTCTTGAATCAAGTAGTTTTCTGCATTGTTTTCATAGTATATACATAATTCTGCCTTTAGCATTATGATACTCCAGTCCAAAGTGCCTCAAACGGTTAAGATTGTTCCTGTGTTtaattcaaaaataaataaacctaGATTATGTGTGTCTCTAATTATATGtcattgtatattgtatattgtatgtgaaaggggatacctagtcaaataaaatgttatttgtcacatgcgctgaa

Function

symbol description
gjc2 Predicted to enable gap junction channel activity. Predicted to be involved in cell-cell signaling. Predicted to act upstream of or within cell communication. Predicted to be located in gap junction and plasma membrane. Predicted to be integral component of membrane. Predicted to be part of connexin complex. Is expressed in brain. Human ortholog(s) of this gene implicated in hereditary lymphedema IC; hereditary spastic paraplegia 44; hypomyelinating leukodystrophy 2; and lymphedema. Orthologous to human GJC2 (gap junction protein gamma 2).

NR:

description
gap junction gamma-1 protein-like

GO:

id name namespace
GO:0007154 cell communication biological_process
GO:0005922 connexin complex cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K07616 GJC1, GJA7, CX45; gap junction gamma-1 protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021613628.2 False 3117 mRNA 0.43 2 72112251 72119910
XM_021613627.2 True 2898 mRNA 0.43 2 72112251 72133973

Neighbor

gene id symbol gene type direction distance location
iba57 iba57 coding downstream 6869 72103148 ~ 72105382 (-)
snap47 LOC106569337 coding downstream 14961 72081880 ~ 72097290 (-)
LOC110530975 wnt3a coding downstream 227709 71855465 ~ 71884542 (-)
arf1 arf1 coding downstream 274568 71835737 ~ 71837683 (-)
LOC118936258 guk1 coding downstream 283069 71818420 ~ 71829182 (-)
LOC110530492 LOC106569335 coding upstream 1710 72135683 ~ 72138188 (-)
LOC110530493 LOC106569333 coding upstream 15093 72149066 ~ 72151039 (-)
LOC110530495 LOC106569329 coding upstream 103358 72237331 ~ 72308215 (-)
LOC110530497 LOC106569328 coding upstream 216162 72350135 ~ 72416525 (-)
LOC110530500 LOC106569325 coding upstream 421660 72555633 ~ 72562473 (-)
G743879 NA non-coding downstream 56923 72030437 ~ 72055328 (-)
G743738 NA non-coding downstream 85470 72026547 ~ 72026781 (-)
G743689 NA non-coding downstream 125547 71986503 ~ 71986704 (-)
G743687 NA non-coding downstream 126010 71986025 ~ 71986241 (-)
G743665 NA non-coding downstream 140835 71971158 ~ 71971416 (-)
G743948 NA non-coding upstream 13324 72147297 ~ 72147666 (-)
G743912 LOC106569334 non-coding upstream 17137 72151110 ~ 72155427 (-)
G743952 NA non-coding upstream 26843 72160816 ~ 72161017 (-)
G743972 NA non-coding upstream 56436 72190409 ~ 72190621 (-)
G743973 NA non-coding upstream 58987 72192960 ~ 72193173 (-)
G743450 NA other downstream 396626 71685190 ~ 71715625 (-)
G743447 NA other downstream 431974 71678685 ~ 71682299 (-)
G743421 NA other downstream 436466 71675445 ~ 71675785 (-)
G743076 NA other downstream 1041169 71070634 ~ 71071082 (-)
G742383 LOC106569128 other downstream 1269794 70835358 ~ 70842457 (-)
G743961 NA other upstream 43611 72177584 ~ 72177867 (-)
G744129 NA other upstream 190219 72324192 ~ 72324992 (-)
G744608 NA other upstream 561075 72695048 ~ 72720467 (-)
G745300 NA other upstream 1247328 73381301 ~ 73381701 (-)
G745292 c8 other upstream 1251679 73385652 ~ 73391433 (-)

Expression


Co-expression Network