RNA id: XM_021613628.2


Basic Information

Item Value
RNA id XM_021613628.2
length 3117
RNA type mRNA
GC content 0.43
exon number 2
gene id gjc2
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 72112251 ~ 72133973 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTGAGGCATTCACAGGAGAAATAGTTCAGTTCCGTCCTCACTCAGTGGATAAacagaaaagagagaggatagaCAGAAAATGCTGTAATAACATATAGTCTTATTATAAGATGTTTGATGTTTTTACTATGTGGGGAAGCTAATGTTGTTGTTAGCTAGTGGGGGTCACGGCATCAGATCAGGATCAGGATCAGGATCAGGATGGACCCTCCATGCCATTGCTGTTGTGGAGACTATGCACGGGAGCTCTAGAGATGGCCGTGGAAATGTGGACAAAGTTATGTTTGAACAGAGCGTGCGGTGCAACTTCTTCTCCAGATTCTAGTTGAAAAGCCTCTATGACCACCATGAGCTGGAGCTTTCTAACTCGTCTTCTGGAAGAGATCCACAACCATTCCACCTTTGTGGGGAAAGTGTGGCTCACAGTACTCATCATATTCCGTATCGTGCTGACTGCCGTGGGGGGCGAGTCCATCTACTCGGACGAGCAGACCAAGTTTACCTGCAACACCAAGCAGCCCGGCTGTGACAACGTGTGCTATGATGCCTTCGCTCCGCTTTCGCATGTTCGCTTCTGGGTCTTCCAGATCATCATGATCTCCACCCCCTCTGTCATGTACCTGGGCTATGCCATACACAAGATAGCCCGCGCTTCCGAGGTGGAGCGCCGGAAGTTCCACCGCCGGAAGAAGCCCATTCAGGCCCACAGGTGGAGGGAGAGCCACCCGCTTGAGGAGGTGCTGGAGAATGAGGACGATGATGCAGAGCCCATGATCTACCAGGAGGACGTGGTGGAAGTCCAGGAGGTCAAGCTGGAGCCGGCCAAGCCGCAGAAACATGACGGCCGCCGGCGGATCATGCAAGAGGGCCTGATGAGGATCTACGTTCTGCAGCTTCTGTCCCGGGCTGTATTTGAGATTGGCTTCCTGGTGGGCCAGTATCTTCTCTATGGCTTCCATGTTAATTCGTTCTATGTGTGCAATAAGGTGCCCTGTCCCCACAAGGTAGACTGCTTCATCTCTCGGCCCACAGAGAAGACCATATTCTTGCTCATCATGTACGTGGTCAGCTGCCTCTGCCTGCTCCTTAATGTTTGCGAGATGTTCCACTTGGGTATCGGAAAGTTCCGGGACACTCTCCGCAAGAGGAGGAACCAGGGGGGGCGACGGACATCGTACAGCTACCCGTACTCCCGTAACATCCCCACCTCTCCCCCCATGTACAACCTGGTCATGAAGTCAGACAAGCCCAACAGGATCATCCCCAACAGTCTTATCACCCACCATGAGAAGAACATGGCCAACAATGCCCTGGAACATCACCAAGAGTGCACCAGTCCAGACGAGAACATCCCCTCAGACCTGGCCAGCCTGCACCGCCACCTACGGGTGGCCCAAGAGCAGCTTGACATGGCTTTCCAGACCTACAATACTAACAAGAACCAGCCCACCTCCAGGACAAGTAGTCCAGTGTCTGGGGGCACCATGGCAGAGCAGAACAGGGTCAACACAGCCCAGGAGAACCAAGGAGCCAGGCCGAAATCAGCCACTACAGAGAAAGCTGCGACCATTGTAAAGAACGGAAAGACTTCTGTGTGGATTTAAGAATGATTAACTTCACGTGGTACAGTAATCATTCTGAAAAGCCATTTTTCAATTTCCAGGACCATATTCTGTGGATACTGGAAGATGTGTGAGATGAGACAAGATATTAAAGGCTTTGGTGCATGAATCGATTGCACTGCCCGAATACACTGTAAAAAGTACAATTTCATTCAACATACAATTGTAAGGCAACCAGCTGCAATAGGATTGTGAGTTTGCTAAACAACATTTTCACACACAAGCGTTTTGTTGTGAGTTTGCTCAACAACATGTTTGTTGGGCAAACTCACAATCCTACTGTACGTTGAATCAACATCTTTTTTCTTTTTACAATATAGATTTAACTTTTGTCACCAACAGAAACCAGCAGTGTGACATGTCGGATCAGGAGCACACAAAATAGGCACATTGTGACCTCAGAACAATagtaaacaatttttttttaaacaaacaaacaaacaaatacagtagTATGGATCATATTATTAGTAGGTTATTGTGTGCTTTAAATGCCATAGCCTGAACATAATTAATATATGCATATGTTGCTTAGTCAAACTTTTATAATTTTTGCGATTTATAGGGAGATATAAAATAAACCATGCTGGCAATATAATTTTACCCTAGCTATTGAACTGGATtaatttgaaaaaaaatatttataatgGTTTTAACTATAACAATTGTGGCCTCGTTAGCCTAGTTAAAAGCAATGCAGTGGTAAGCACTGTTTAATGGTACTATGCTTGAATCATGATGCTTGAAAAATGGACAGTCAACCAAATGtgaagatttttttgttgttgagaaatTCAGAACTGTTCAGATTTGCACTTGTAACGTTTTAACTCATTTTGAGTTGTATTATGACATTTAGAGAAATGATGCATGAATAATTTATTTGTTTAAGAAATTTTGGATGTAGTTAGTATAGGTTTTGTTGAAAGAAGAGATGTGACATGTTATGGAACAAATGGTGTTCCATCAGCAGCAAAGATTTGAGCTACACTGTTCTCCATAAAGTCATATTTTAATTCACTCCACTTCTCAAAGCTTTGTCACGTTAGGCATTGTCGGAATAAATTAGTTAAAGAAGAAAAAGGTAAGTTGTTGTATTGAAAACTTACCGTAAACCAATTTCTGATCATTTCTGATGTTTTTGTGGGGCATATAATGCATGCTACATTTTCACACATATGACATATACAATACAATGTACATAGTCAAAAATCTATCCTCATAAAGTTGACTCCATATATTCCTATATTTAGGAATCTGTCTTGAATCAAGTAGTTTTCTGCATTGTTTTCATAGTATATACATAATTCTGCCTTTAGCATTATGATACTCCAGTCCAAAGTGCCTCAAACGGTTAAGATTGTTCCTGTGTTtaattcaaaaataaataaacctaGATTATGTGTGTCTCTAATTATATGtcattgtatattgtatattgtatgtgaaaggggatacctagtcaaataaaatgttatttgtcacatgcgctgaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU844475 lncRNA downstream 56923 72030437 ~ 72055328 (-) True G743879
TU844315 lncRNA downstream 85470 72026547 ~ 72026781 (-) True G743738
TU844265 lncRNA downstream 125547 71986503 ~ 71986704 (-) True G743689
TU844263 lncRNA downstream 126010 71986025 ~ 71986241 (-) True G743687
TU844241 lncRNA downstream 140835 71971158 ~ 71971416 (-) True G743665
TU844554 lncRNA upstream 27387 72147297 ~ 72147666 (-) True G743948
TU844511 lncRNA upstream 31200 72151110 ~ 72155427 (-) True G743912
TU844558 lncRNA upstream 40906 72160816 ~ 72161017 (-) True G743952
TU844578 lncRNA upstream 70499 72190409 ~ 72190621 (-) True G743972
TU844579 lncRNA upstream 73050 72192960 ~ 72193173 (-) True G743973
XM_021613626.2 mRNA downstream 6869 72103148 ~ 72105382 (-) True iba57
XM_021613614.2 mRNA downstream 14961 72091148 ~ 72097290 (-) False snap47
XM_021613629.2 mRNA upstream 15773 72135683 ~ 72138188 (-) True LOC110530492
XM_021613630.2 mRNA upstream 29156 72149066 ~ 72151039 (-) True LOC110530493
XM_021613634.2 mRNA upstream 117421 72237331 ~ 72308215 (-) False LOC110530495
XM_021613637.2 mRNA upstream 230225 72350135 ~ 72408277 (-) False LOC110530497
XM_021613636.2 mRNA upstream 230225 72350135 ~ 72416525 (-) False LOC110530497
TU843988 other downstream 396626 71685190 ~ 71715625 (-) False G743450
TU844567 other upstream 57674 72177584 ~ 72177867 (-) True G743961
TU844736 other upstream 204282 72324192 ~ 72324992 (-) True G744129
TU845253 other upstream 575138 72695048 ~ 72720467 (-) False G744608
TU846007 other upstream 1261391 73381301 ~ 73381701 (-) True G745300
TU845998 other upstream 1265742 73385652 ~ 73391433 (-) False G745292

Expression Profile