RNA id: TU844736



Basic Information


Item Value
RNA id TU844736
length 801
RNA type TUCP
GC content 0.56
exon number 1
gene id G744129
representative True

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 72324192 ~ 72324992 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ccaggagcactgctcgtgtcgcctacgtcatatctctccttactggacgggctcgtgagtggggcacggcaatctgggaggcaagggctgagtgtactaaccagtatcaggactttaaggaggagatgatacgggtttttgatcgatctgtttttggggaggaggcttccagggccctgtcttccctatgtcaaggcaatcgatccataactgactactctattgagtttcgcactcttgctgcctccagtggctggaacgagccggctttgctcgctcgtcttctggagggtttccgcgcagaggtaaaggatgagattctctcccgggaggttccttccagcgtggattccttgattgaactcgctattcgcattgagcgacgggttgatcttcgtcaccgagctcgtggaaaggagctcgcgctctccgtcgcctccctctccgcatcactaccatcttcctctgccggctcgggtgctgagcccatgcagctgggaggtatccgcatctcgactaaggagagggaacggagaatcaccaaccgcctctgtctctattgcggttccgctggtcattttgtcacttcatgtccagtaaaaggccagagctcgtcagtaagcggagggctactggtgagcgctactactcctgtctctccttcaagatcctgcactaccttgtcggtccatctacgctggaccggttcgtcagcttcctgcagtgccttaatagacactggggcggagggctgttttatggacgagacctgggctcgggaacatgacattcctctcagac

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU844685 lncRNA downstream 63741 72260121 ~ 72260451 (-) True LOC110530495
TU844690 lncRNA downstream 71261 72252703 ~ 72252931 (-) True G744083
TU844689 lncRNA downstream 72163 72251718 ~ 72252029 (-) True G744082
TU844688 lncRNA downstream 73067 72250845 ~ 72251125 (-) True G744081
TU844585 lncRNA downstream 122165 72201750 ~ 72202027 (-) True G743979
TU844995 lncRNA upstream 1769 72326761 ~ 72327100 (-) True G744370
TU845001 lncRNA upstream 9404 72334396 ~ 72334625 (-) True G744376
TU845002 lncRNA upstream 11072 72336064 ~ 72336271 (-) True G744377
TU845021 lncRNA upstream 25578 72350570 ~ 72351018 (-) False LOC110530497
TU845025 lncRNA upstream 29859 72354851 ~ 72355035 (-) False LOC110530497
XM_021613634.2 mRNA downstream 15977 72237331 ~ 72308215 (-) False LOC110530495
XM_021613630.2 mRNA downstream 173153 72149066 ~ 72151039 (-) True LOC110530493
XM_021613629.2 mRNA downstream 186004 72135683 ~ 72138188 (-) True LOC110530492
XM_021613627.2 mRNA downstream 190219 72112251 ~ 72133973 (-) True gjc2
XM_021613628.2 mRNA downstream 204282 72112251 ~ 72119910 (-) False gjc2
XM_021613637.2 mRNA upstream 25143 72350135 ~ 72408277 (-) False LOC110530497
XM_021613636.2 mRNA upstream 25143 72350135 ~ 72416525 (-) False LOC110530497
XM_021613641.2 mRNA upstream 230641 72555633 ~ 72562473 (-) False LOC110530500
XM_021613642.2 mRNA upstream 230641 72555633 ~ 72562473 (-) True LOC110530500
XM_021613647.2 mRNA upstream 238310 72563302 ~ 72634021 (-) False LOC110530503
TU844567 other downstream 146325 72177584 ~ 72177867 (-) True G743961
TU843988 other downstream 608567 71685190 ~ 71715625 (-) False G743450
TU845253 other upstream 370056 72695048 ~ 72720467 (-) False G744608
TU846007 other upstream 1056309 73381301 ~ 73381701 (-) True G745300
TU845998 other upstream 1060660 73385652 ~ 73391433 (-) False G745292
TU845996 other upstream 1065695 73390687 ~ 73391433 (-) True G745292
TU847143 other upstream 1618273 73943265 ~ 73944430 (-) True LOC110530984

Expression Profile