RNA id: TU844685


Basic Information

Item Value
RNA id TU844685
length 331
lncRNA type sense_over
GC content 0.40
exon number 1
gene id LOC110530495
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 72237331 ~ 72308215 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTATATTTATATAGCTATGGCAATGCAACAagatattgtatttttttatgtaagTACTTCGTCATACAAGGCTGTTGTGAAGTTGTTGAAATGCCCATGATTTCTGATGGGATTAGACAACGGCAATATGCACTTACAGGTGAAAAGAAATTACATGTGCATTGTGTCATTCTGTTGTTTTCTGTAATTGTGTTGTATTCTACAGGACTAGCCTATCGTCGCTGTGACAGCAATGGGACGTGGGAGCtgaccaccaccaacaacaagaCTTGGGCCAACTACAGCGAATGTGCAAAATTCCTCTCGCACTATAACCAAAACAATGAGAAGG

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004991 parathyroid hormone receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU844690 lncRNA downstream 7190 72252703 ~ 72252931 (-) True G744083
TU844689 lncRNA downstream 8092 72251718 ~ 72252029 (-) True G744082
TU844688 lncRNA downstream 8996 72250845 ~ 72251125 (-) True G744081
TU844585 lncRNA downstream 58094 72201750 ~ 72202027 (-) True G743979
TU844580 lncRNA downstream 66121 72193558 ~ 72194000 (-) True G743974
TU844995 lncRNA upstream 66310 72326761 ~ 72327100 (-) True G744370
TU845001 lncRNA upstream 73945 72334396 ~ 72334625 (-) True G744376
TU845002 lncRNA upstream 75613 72336064 ~ 72336271 (-) True G744377
TU845021 lncRNA upstream 90119 72350570 ~ 72351018 (-) False LOC110530497
TU845025 lncRNA upstream 94400 72354851 ~ 72355035 (-) False LOC110530497
XM_021613630.2 mRNA downstream 109082 72149066 ~ 72151039 (-) True LOC110530493
XM_021613629.2 mRNA downstream 121933 72135683 ~ 72138188 (-) True LOC110530492
XM_021613627.2 mRNA downstream 126148 72112251 ~ 72133973 (-) True gjc2
XM_021613628.2 mRNA downstream 140211 72112251 ~ 72119910 (-) False gjc2
XM_021613626.2 mRNA downstream 154739 72103148 ~ 72105382 (-) True iba57
XM_021613637.2 mRNA upstream 89684 72350135 ~ 72408277 (-) False LOC110530497
XM_021613636.2 mRNA upstream 89684 72350135 ~ 72416525 (-) False LOC110530497
XM_021613641.2 mRNA upstream 295182 72555633 ~ 72562473 (-) False LOC110530500
XM_021613642.2 mRNA upstream 295182 72555633 ~ 72562473 (-) True LOC110530500
XM_021613647.2 mRNA upstream 302851 72563302 ~ 72634021 (-) False LOC110530503
TU844567 other downstream 82254 72177584 ~ 72177867 (-) True G743961
TU843997 other downstream 544496 71685190 ~ 71715625 (-) True G743450
TU843991 other downstream 544521 71685190 ~ 71715600 (-) False G743450
TU843996 other downstream 544521 71685190 ~ 71715600 (-) False G743450
TU843989 other downstream 562642 71685190 ~ 71697479 (-) False G743450
TU844736 other upstream 63741 72324192 ~ 72324992 (-) True G744129
TU845253 other upstream 434597 72695048 ~ 72720467 (-) False G744608
TU846007 other upstream 1120850 73381301 ~ 73381701 (-) True G745300
TU845998 other upstream 1125201 73385652 ~ 73391433 (-) False G745292
TU845996 other upstream 1130236 73390687 ~ 73391433 (-) True G745292

Expression Profile