G667239


Basic Information

Item Value
gene id G667239
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 4752521 ~ 4756012 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU759898
atcaataaggcatCATATCTTtcacatgggtcagtcggtcatggaaagagcaggtgttaatgttttctatactcagtgtatactgtaGAACGACAGTATTATTTGTGCTAATTTTGGACAGTAAACATTTTGTAGATTAGATATGGCACATCTAGAAATTATATATCTAGAAATTATACAGAAATAATATTTGTTGTTGCATAAATATTGGATGTCTTTTTGGACAGTGTTAAAGGGAAGTGGTCGTAAACACTTCCTGATTGTGCTCCTCCCCTAAACTTCACATTCCACAGGGTGGGAGATGCTGGtgatttaatgtgtgtgtgtgtgtgtctccagcagCTCGTCCGTCTCTAAAACCTTGTTCCTTCGAGGACTGCGGAGGCAGGGAGGTTCCCGTCATCGGGATCTGAAGGGACCTGTCAATCAAAACAATTTGTCAATCACGTTCCAGCTTAAGACGATGGGTTGCAAAGTTCTTTCCTAACATTTCCAGGTTTTCCATAAATCCTGCTCATTTCCTGCTGATTCCAGGAATCTTACAACCAGGATTTATGGAAGCTGAACTTTTTTCCCCCCTCGAAACTAGAATTTTGCAACTAATATTATTACAAGAGCAAGTAGACCAACTGTTTTAGTATCCGTGGCAACATAACGGAAAAACTAAAATACCAATAAACATAATATGCTACATAAAATACAAGAATGtacactgggtgtacaaaacattaggaacaccggctctttccatgacatagaccaggggtattcaactcacCCTACGAGGTGACGGTTTTCTATCCTACctaataattaattgcacacacctggtgtctcaggtctaaaatCCAGTCCCTGATTAACAGGGGAacaatggaagaaaaaaaatgctATGGAACTGAGTTCCAGAGATTAGACTGAgggacatagactgaccaggtgaatccaggtgaaagctaggatcccttgtgttaaatccacttcaaaatcagtgtagatgaaggggaggagacggggttaaagaaggattttaaagcctcGAGACAAATGGGACATGGGCTgtctatgtgtgccattcagaaggtgaatggggaagacaaaatattgaagtgcctttgaacagtggtatggtagtaggtgtcgggaacaccggtttgagtgtgtcaagaagtaCAACTTAAGAActgcaacttgacacaactgtgtgaagcgttggagtcaacatgggccagcatccctgtggaacgctttagacaccttgtagagccccATGACCTGataaactgaggctgttctgaggacaaaagggggtgcaactcaatattaggatggtgttcttaatgttttctcCACTCAGTGTATTTATAGACCCAACTACACAAACATGAGTTACCACACACATCCTATTATACTACAGAGATACTACATACAGGTGAAAAGATCAGAAGCTGTGCATGAATCATGGAATCTGGAGTGTGAGGTGGAAAGTGAAGATGGAAGGAAAAGAGGATTGAGATGTGAGGGGTAACGTTTTTTCCAGAAAGCTTCCTATCACTTTTAGCCAATTAGAAAAGACACATCTTAGTAATAAAAAAAATCTTCCAGGAAATCTCGACCCCTTTTTGGTCAAAAGTGAAAGAGGTTCAGATAAAAGAGGGAATCCTAACTTCCACTTGTTTATGCACGAATGTCAAAATGCAGAGACTGCATTCTAATCTGACTTAAACAGGAAGTTAGGATTCACCCCTAAGAGAATAGTGGACAGAGAAGCGTGTGGTGATTGTTGGTTCGGTTTGCTGTGCCCCTACCTTGGCTCGTCTGAGGTTCGAGCTAAGAGTGTAAgcgttagggggggggggggttagtgatCAAGTCTGAGAAGAATCAGAAGGGCTGTCCAGTCTCTTGATTAGAGCCGTGGCCCCGTAGCCCTGCTGCTGTCCAGAGAGCAGTCCGTCCTCCTGGAACAGACAGTCTTTATTTTTAATTGACCTTGATATTACGGTCAGGGGGGGGGTAGGAAAGTGCTGTGTTATCATCGCTGTCTAAAACCATATTTTCAGGACAAAGGAAAAGAGCATCCACGTTTGACCATTAATGAATATACATTTATGAaacttcaggatgttattttggAAAACGTTTTCCTTGGTTCTAGACTAGAGTCATGAAATGTTCCGATTACGTCGAGTTACTTTCAATACATTGtaacaattttaaaaaaaaaaaaaggggccaAAATGGAGTTACAAGGTTTTCTTTCCCCCGAGAGTGACGTTATCTTATCTTAGTTTACCAGGTTTTCCTATTGAGGTTTAAAACACCTCTCAGATCTGCCCGTCCCAAACGGAACGCTTGTCTGAGGGGCCTGGGGGACAAAGGTCGAGAACGACGCTCTCTTCAACCTCTCAAAATCAGCCACAAGGTCTTGTCAATCGCCTTTGGTTAACACTGCTCTTTCTCATGGTTAACGGTCTCAAATATATCTGTCTATTGATACAATCTCTTTCTTGCTTTCTCTGACCTCCTGTTCCTGTCTCTTGCTTTCTCCTTTTTTTTTGAAAATCTCACAGCAACGTTACCAGTAGTGAGACAAGCACGTGATCATTAGGATTCAACATTCTGCGGTGTAACGGATTCAACATTCTGCGGTGCAACGGATTCAACATTCTGCGGTGCAACGGATTCAACATTCTGCGGTGCAACGGATTCAACATTCTGCGGTCCAACGGATTCAACATTCTGCGGTCCAACGGATTCAACATTCTGCGGTCCAACGGATTCAACATTCTGCGGTGTAACGGATTCAACATTCTGCGGTACAACGGATTCAACATTCTGCGGTCCAACGGATTCAACATTCTGCGGTCCAACGGATTCAACATTCTGCGGTGCAACGGATTCAACATTCTGCGGTGCAACGGATTCAACATTCTGCGGTGCAACGGATTCAACATTCTGCGGTGCAACGGATTCAACATTCTGCGGTGCAACGGATTCAACATTCTGCGGTGCAACGGATTCAACATTCTGCGGTGCAACGGAT

Function

NR:

description
PREDICTED: melanoma-associated antigen C1-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU759898 True 3046 lncRNA 0.43 3 4752521 4756012

Neighbor

gene id symbol gene type direction distance location
LOC110529274 LOC106571028 coding downstream 130708 4618977 ~ 4621813 (-)
LOC110529272 tmeda coding downstream 133908 4591470 ~ 4618613 (-)
LOC110529271 ei2bb coding downstream 162025 4582547 ~ 4590496 (-)
LOC110529162 ptk2b coding downstream 394365 4279536 ~ 4358156 (-)
baalcb LOC106571017 coding downstream 704720 4037616 ~ 4047801 (-)
LOC118965591 NA coding upstream 16134 4772146 ~ 4832142 (-)
LOC110529294 LOC105029941 coding upstream 89334 4845346 ~ 4881446 (-)
LOC110529164 LOC106571040 coding upstream 431347 5187359 ~ 5204422 (-)
LOC110529166 LOC106571043 coding upstream 588500 5344512 ~ 5362682 (-)
LOC110529167 LOC106571044 coding upstream 608207 5364219 ~ 5450340 (-)
G667242 LOC106571030 non-coding downstream 918 4722278 ~ 4751603 (-)
G667221 LOC106571033 non-coding downstream 47676 4687265 ~ 4704845 (-)
G667174 NA non-coding downstream 75187 4580283 ~ 4677334 (-)
G667264 NA non-coding upstream 31900 4787912 ~ 4794254 (-)
G667330 NA non-coding upstream 197361 4953373 ~ 4954093 (-)
G667340 NA non-coding upstream 228976 4984988 ~ 4985454 (-)
G667341 NA non-coding upstream 229444 4985456 ~ 4985718 (-)
G667345 NA non-coding upstream 240151 4996163 ~ 5012323 (-)
G667122 NA other downstream 262301 4488806 ~ 4490220 (-)
G665927 NA other downstream 1082374 3668232 ~ 3670147 (-)
G665797 NA other downstream 1230898 3520790 ~ 3521623 (-)
G665718 NA other downstream 1334233 3417113 ~ 3418288 (-)
G665655 NA other downstream 1411561 3340056 ~ 3340960 (-)
znf395b LOC106571047 other upstream 792791 5535756 ~ 5551550 (-)
G668192 NA other upstream 1450546 6206558 ~ 6284021 (-)
G668238 NA other upstream 1524184 6280196 ~ 6281640 (-)
wdr21 dcaf4 other upstream 2030520 6786377 ~ 6801903 (-)
G669087 NA other upstream 2233838 6989850 ~ 6991612 (-)

Expression


Co-expression Network