XLOC_002663 (sgtb)


Basic Information

Item Value
gene id XLOC_002663
gene name sgtb
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 15381972 ~ 15405564 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00004950
GACCAGTCATTTCCGTCAGTGATGCGCGTGCGCAGTGCTGAGCATCAGTGTCACGAGAGTGTTCATGACTGTGGAGCGAGCGCTGCGGGCACTTTCTCCAGACAAAATGGCAGTGGAAAAGCGTTTGGCATATTCTATGGTGCAGTTCCTCagagatcagacacactgtggCTCACTGAATTCAGATGAACAGGAGAGTCTGGAAGTTGCGATACAGTGTCTGGAGACGACATTTAAGATCAGCTCCAGTGACTGTCATCTCGCCGCTCCTCAACCACTGAGAGAGATTTTCCTCAATTCTCTCCTCAAAAATGATATTGTTACGTTACCCAAGACATTTCCATCTCCAGAGGACATTGAAAGAGCCGAGCAGCTTAAAAATGAAGGGAATAATCACATGAAAGAGGAGAATTACAGCAGTGCTGTCGATTGCTACACAAAAGCCATTGAGTTGGACCAAAGAAATGCAGTTTATTACTGTAACAGGGCTGCAGCACATAGTAAACTTGAAAACTACACAGAGGCAATGGGAGACTGTGAACGAGCGATTGCGATCGACCCATCGTACAGTAAAGCTTATGGCAGAATGGGATTGGCGCTAACATCCATGAGCAAGTATCCAGAGGCGATATCATATTTCAATAAAGCTCTGGTGTTAGATCCTGAAAACGACACTTACAAATCCAACCTAAAGATTGTGGAGCAGAAACAAAAAGAAGCCTCCAGCCCGACGGCCACAGGACTGGGGTTTGACATGGCCAGCCTCATCAATAACCCTGCTTTCATTAGCATGGCTGCCAGTGTGATGCAGAACCAGCAGGTCCAACAACTCATGTCAGGCATGATGTCGAACGCAGTTGGTGGACCTGCAGCAGGAGTGGGTGGATTATCTGACATATCCAGTCTCATTGAAGCTGGACAGCAGTTCGCCCAGCAGATCCAGCAGCAGAATCCAGAGCTGATCGAGCAGCTGAGGAACCACATCCGAAGCCGTTCCTTCAGCGGCAGCGCAGAGGAGCATTCCTGATCCCAGCAGGATCAAGAAGTGAAGGAGTGCAGTTGGAGAAGAGTCGTGAGTGCAATCGTTAAGTTCATACTTCTATTGAGTCGAAGGCAAGACGGAGGCCATGGCACTTTATATGGAGGATCAGGaggaaagaggaaaaatcaaacaacaacacacatttaaaatcacCTTATACACAGAGAACATTACCTTAATACCCGAGTGAGGTTTCTTTGTCTTCGTCTCTGTAGGTAATATTTCAGTCCTCTCTTTTTGAATGTAGCTGGTAACAACATCAGAGTTGCATTTATTTTACTAAACGAATGACTGGTCATCCGTTTGTGCCTATTAATCAGATGTGGGACCATGGTTaatgggacagttcacccaaaaatgtaaattcacaCAGCGTTCGCATACGATTTACTcgcccttaagtggttccaaaccttaatgTGTCTTTTTTCtgtaagatattttgaggaatgctggaaTCTAGAAGGCATTAGTTTTCATAGTATGGAAAAATTATATCAaaattcaacattcttcaaaatgtgttcttttgtgtttaacaaaaaaccCTCAAATTTCAAGTCTGGAACAACTGGTGGATGAGTAGAtaactgaattttcatttttggctgaactatcaaTGAAATATTCACCTTCAAAATGATATACAAACATGAAGGCGATTAAATGTTGATGGAATTGTTAAGATTTTTAGATAAATATCTATTTAACACATTCTCTGATTATTATTACCACATATTCTGTTCGTTTTAGGAACAAGAGACATTTGTGTGATAATCACCTTTTCGGCTGCTTCACCCGTCCTGTTCGTTTAGTCATTTAATTCATTGCTCAAGGCAACAATCCATTGATATAATAAGTATATTCATAATCTTactgtttgcatttttatttgcatGCTCCATAATCTGATATTTGCAGTCAGGTGAGTGACTGAAGCTTATGTTATATGCTAATAAAACAGAGCAGTATAATGTTtttgtcaacaacaacaacaacaacaacaacaacaaaaaaagaacaatgttaataaatgtgtctTGAAGTC

Function

symbol description
sgtb Predicted to enable molecular adaptor activity. Predicted to be involved in positive regulation of chaperone-mediated protein folding; posttranslational protein targeting to endoplasmic reticulum membrane; and ubiquitin-dependent ERAD pathway. Predicted to be part of TRC complex. Predicted to be active in membrane. Orthologous to human SGTB (small glutamine rich tetratricopeptide repeat co-chaperone beta).

GO:

id name namespace
GO:1903646 positive regulation of chaperone-mediated protein folding biological_process
GO:0006620 posttranslational protein targeting to endoplasmic reticulum membrane biological_process
GO:0030433 ubiquitin-dependent ERAD pathway biological_process
GO:0072380 TRC complex cellular_component
GO:0005829 cytosol cellular_component
GO:0016020 membrane cellular_component
GO:0060090 molecular adaptor activity molecular_function

KEGG:

id description
ko00550 Peptidoglycan biosynthesis
ko01003 Glycosyltransferases
ko01011 Peptidoglycan biosynthesis and degradation proteins
ko03110 Chaperones and folding catalysts

ZFIN:

id description
ZDB-GENE-040704-72 Predicted to enable molecular adaptor activity. Predicted to be involved in positive regulation of chaperone-mediated protein folding; posttranslational protein targeting to endoplasmic reticulum membrane; and ubiquitin-dependent ERAD pathway. Predicted to be part of TRC complex. Predicted to be active in membrane. Orthologous to human SGTB (small glutamine rich tetratricopeptide repeat co-chaperone beta).

Ensembl:

ensembl_id ENSDARG00000016769

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00004950 True 2090 mRNA 0.41 12 15381972 15405564

Neighbor

gene id symbol gene type direction distance location
XLOC_002662 pum3 coding downstream 41522 15321522 ~ 15340450 (-)
XLOC_002661 spp1 coding downstream 253201 15120711 ~ 15128771 (-)
XLOC_002660 CT027832.1 coding downstream 295675 15082410 ~ 15086297 (-)
XLOC_002659 cldn23b coding downstream 328358 15050469 ~ 15053614 (-)
XLOC_002658 cldn23a coding downstream 333191 15046837 ~ 15048781 (-)
XLOC_002664 smc5 coding upstream 212177 15617741 ~ 15644974 (-)
XLOC_002665 mamdc2b coding upstream 243293 15648857 ~ 15672862 (-)
XLOC_002666 NA coding upstream 311175 15716739 ~ 15724104 (-)
XLOC_002667 tjp2a coding upstream 410301 15815865 ~ 15879569 (-)
XLOC_002668 pip5k1ba coding upstream 475745 15881309 ~ 15964029 (-)
XLOC_002656 NA non-coding downstream 339224 15031006 ~ 15042748 (-)
XLOC_002657 NA non-coding downstream 347012 15032972 ~ 15034960 (-)
XLOC_002653 CT027820.1 non-coding downstream 649573 14732283 ~ 14732399 (-)
XLOC_002648 BX000705.1 non-coding downstream 1450276 13931569 ~ 13931696 (-)
XLOC_002673 NA non-coding upstream 1600661 17006225 ~ 17010898 (-)
XLOC_002674 NA non-coding upstream 1611235 17016799 ~ 17027111 (-)
XLOC_002676 NA non-coding upstream 1679960 17085524 ~ 17088911 (-)
XLOC_002678 BX324123.4 non-coding upstream 1698734 17104298 ~ 17132910 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000304_04396799_04405867 SGTB coding CI01000304 null 4396788 ~ 4405867 (-)