CI01000304_04396799_04405867 (SGTB)


Basic Information

Item Value
gene id CI01000304_04396799_04405867
gene name SGTB
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 4396788 ~ 4405867 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000304_04396799_04405867.mRNA
AGCTATTTCCGGCGAGACGGCGCATGCGCTGTGCTGCGCATCATCAGTCTCACGCGAGTGTTCATGACGCGGTGGCTGAAACGAGCGCTGCGGGCACTTTCTCCAGGTTTCTCCCAGACAAAATGGCAGTGGAAAAGCGCTTGGCATATTCTATCGTGCAGTTTCTCAGAGATCAGACACACTGTGGCTCGCTGAATTCAGATGAACAGGAAAGCCTGGAAGTTGCCATACAGTGTCTCGAGACCACGTTCAAGATCAGCTCCAGTGACTGCCATCTTGCCGCCCCTCAGCCACTGAGAGAGATATTCCTCAACTCTCTCCTCAAAAATGATATTGTTACGTTACCTGAGACGTTTCCATCTGCAGAGGATATTGAGAGAGCTGAGCAGCTTAAAAATGAGGGCATGTCAACTTTCCTAATGTATTTAGACTCAAAACACTGGAATAACCACATGAAAGAGGAGAATTATAGCAGTGCCGTGGACTGTTATACAAAAGCCATTGAGTTGGACCAAAGAAATGCAGTCTATTACTGTAACAGGGCTGCGGCACACAGTAAACTTGGAAACTACACAGAGGCTACGGGAGACTGTGAACGAGCAATTGCGATTGACCCATCATACAGTAAAGCTTATGGCAGAATGGGATTGGCACTAACTTCTATGAGCAAGTATCCAGAAGCGATATCTTATTTTAATAAAGCTCTGGTGTTAGATCCTGAAAACGACACCTACAAATCCAACCTAAAGATTGCAGAGCAGAAACAAAAAGAAGCATCCAGTCCTACGGCCACAGGACTGGGGTTTGACATGGCCAGCCTCATCAATAACCCCGCTTTCATTAGCATGGCTGCCAGTGTGATGCAAAACCAGCAGGTGCAACAACTGTAAGTTTAAATAAA

Function

symbol description
sgtb Predicted to enable molecular adaptor activity. Predicted to be involved in positive regulation of chaperone-mediated protein folding; posttranslational protein targeting to endoplasmic reticulum membrane; and ubiquitin-dependent ERAD pathway. Predicted to be part of TRC complex. Predicted to be active in membrane. Orthologous to human SGTB (small glutamine rich tetratricopeptide repeat co-chaperone beta).

GO:

id name namespace
GO:0005575 cellular_component cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000304_04396799_04405867.mRNA True 901 mRNA 0.47 9 4396788 4405867

Neighbor

gene id symbol gene type direction distance location
CI01000304_04370274_04377315 PUM3 coding downstream 19307 4370274 ~ 4377481 (-)
CI01000304_04269487_04273391 NA coding downstream 123397 4269202 ~ 4273391 (-)
CI01000304_04263955_04264962 NA coding downstream 131826 4263846 ~ 4265201 (-)
CI01000304_04253975_04256004 NA coding downstream 139186 4253411 ~ 4257602 (-)
CI01000304_04230808_04231542 NA coding downstream 164887 4229815 ~ 4231901 (-)
CI01000304_04429949_04448465 NA coding upstream 23750 4429617 ~ 4448468 (-)
CI01000304_04458463_04459040 NA coding upstream 51746 4457613 ~ 4459234 (-)
CI01000304_04517750_04518058 NA coding upstream 111727 4517594 ~ 4518058 (-)
CI01000304_04522897_04527887 SMC5 coding upstream 116982 4522849 ~ 4527887 (-)
CI01000304_04536971_04554186 MAMDC2B coding upstream 131104 4536971 ~ 4554186 (-)
G421742 NA non-coding downstream 31767 4364735 ~ 4365021 (-)
G421741 NA non-coding downstream 32187 4364278 ~ 4364601 (-)
G421740 NA non-coding downstream 33052 4363466 ~ 4363736 (-)
G421728 NA non-coding downstream 60846 4335724 ~ 4335942 (-)
G421723 NA non-coding downstream 81815 4312359 ~ 4314973 (-)
G421757 NA non-coding upstream 39522 4445389 ~ 4446674 (-)
G421780 NA non-coding upstream 216089 4621956 ~ 4623620 (-)
G421782 NA non-coding upstream 218833 4624700 ~ 4624922 (-)
G421783 NA non-coding upstream 219445 4625312 ~ 4625545 (-)
G421785 NA non-coding upstream 226322 4632189 ~ 4632647 (-)
G419354 NA other downstream 2130547 2262502 ~ 2266241 (-)
G419353 NA other downstream 2160682 2229384 ~ 2236106 (-)
CI01000304_04661808_04672936 PPWD1 other upstream 255949 4661766 ~ 4672947 (-)
CI01000304_06480836_06483554 SUB1L2, SUB1A, SUB1 other upstream 2071584 6480743 ~ 6483986 (-)
G422354 NA other upstream 2225219 6631086 ~ 6631499 (-)
G422378 NA other upstream 2338812 6744679 ~ 6783046 (-)
G422810 NA other upstream 3224292 7630159 ~ 7652703 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_002663 sgtb coding NC_007121.7 CM002894.2 15381972 ~ 15405564 (-)