CI01000304_04536971_04554186 (MAMDC2B)


Basic Information

Item Value
gene id CI01000304_04536971_04554186
gene name MAMDC2B
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 4536971 ~ 4554186 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000304_04536971_04554186.mRNA
CAGCCAGACAGAAGTATCACATCTGAGCTTTGGTTATACGCTGCCAGCTTGAAAGAAGGACAGGATAAGAGAGTGAAGTCTAGATCTCTAGTTCTAGCTCTCTTTTGCCAGAACAGGTCTTATTTCATCTTTGCAGGACAAAACATAGGAGAGAAGATGCTTTCTTTCTATGTTCTGTGCTTTATTGTGACAGCTAAAGCAGAGCTTTTGCCAGGCTCCTGCAGCTTTCAGGAAAGCATATGTGGCTATATGTCTGACCCAGCCTTTCTCAGCTGGACCCTCAACCCATCCGGACACTTCATCACAGTTGACGATCGCGTCCAGGAGGATCAGGGAAAGGCTGTTCTTTTAGGTCCAGATGTGGACCAACAGGACTGGAGCTGTTTCAGGATGGTCTATCAGGTCACAGGCAGCGCTTCCCTGCAGGTGCAGAAGCGCACAGACGGAGAGAGTTTCGATCAGGTGCTCTGGACAACCCAAAGCCCGTCTGACAGCTGGCTCATCGCCAGCATTGACCTTCAGAACTCTACCAAAACATTTAAGATTGTCATTGAAGGCAAACTGGGAGAAGAAGGAGGCAGCAGTGTGTCCATCTTTGAGATAAAGATCTCTGACAAATATTGTATAGAATGTGACTTTGAAGAAGCTCACCTGTGTGGATATACAAACCAGAAGAACAGATATATGAACTGGCGTGTGGGAAGATCAGATGATGCTCCACTGATAGATGGAACAGGTCAGTACATGTTTGTGAACTCTACTGACACTAAAAGCTTCCAGGAGGTGGCCGAGCTGGTGTCTCCAATGACCACAGTGCCCATGTCGGGCTGCTTGAGCTTCCAGTACAGGCAGTATCATGCCGGGGACCATCTGTTCTCCCTTTTCAGCAGGGATCAGGCTGGACAATATCAGGAACTATGGAGAGCCGATCTACCTGAAAACAACCAAGTGGACTGGAGTCCAGAAGCCAGGGTCTGGATACCAGTACAAGTGGACCTGAAAGCTCCTTATCCTATGGAGTTGGTGTTTGAGGTGGCGTTCAACAGTCCTCATGGAGGATACGTGGTTCTTGATGACATTTCCTTCTCTCCAGAGTTCTGTAATGCAGGCACAGAGCCAGTGTTTGATCCATCTATTGCAAACTGTGACTTTGAGTCAGGATATTGTCAGTATGTCCAGACACTGTTGGGTAATTCACTGTGGAGGAGAGTGTCTGTCAGGCCCAACATCTACAGCGCTGGAGACCATACGACAGGAGCAGGATCCTTTTTGTTGGCAAACTCTCGCTTAAGTTTACAGTCTGGATATGTCAGCCGTTTGTTTGGCCCGCCAATGCCAGGGAATCAGAAATACTGCCTGAAGTTCTTCTACTCCCTGCAAAGTTTTAGTGGAACAGATCAAGTCCTGTCAGCGTATCTGTATTACAGTGATGGTACTAAACAAGAACAAATATGGAGCCAGAATGAGAAGATAAGAAATGTTTGGATTGCAGTTGAACTGACCATTCAAAGTCAGAAGAATGCTCAGCTGTGCCTGGCGAGAGGTTCCTTGGAGCATATCTTGAGCTGCTACCCTAAAGCCCTGGGAGAGGGGAGGGCAGGGGAGGCACCTCAGGCAGAACACAAGGTCCCATCAGGACTTCTAGCCAAGGCTCGTGACTGGCAGTTGAGAGTGGACCTTGTGAGGCAGCTCAAGTTTCCAGAACAGATTGCAAGTACGTCACTCAGGCCTGACTTGGTTTTAACATCTGATGCCTCGAAGCAAGTGATGCTGCTGGAGTTGACTGTTCCCTGGGAGGAGCGGATAGAGGAGGCCCATGAGCGGAAGAGGGCTAAGTACCTCGAGCTGGTGGAGGCTTGCAGAAGAAATGGGTGGAGGGCCTGCTCATCTTCTCTGTCAGCCCCGTCTCACTGTGACTTTGAGACTGGTCTTTGTGGATACACTCAGGATAAGGAAGGAGACTCAGGTGACTGGATTCTGGCCAGAGGACCCACACCAACATCCTACACAGGGCCAAGAGGAGACCATAGCACTGGAATGGGTCATTATTTGCACATTGAAGCATCAGTGATGCTGCCCGGTCACAAAGCGCGGCTGCTCTCCAGCTCTCTGCGTGGATCTAGAGAACCACAGTGCTTGCAGTTCTACTACCATATGTATGGGTCAGGGATTGGCCAGCTGAGCGTTTACCTCCTGACTGAACAAGAAAATGAGGACAAATTATTGTGGACGAGCCACGGGGAACAGGGCACATCCTGGCTAAGAGCATCAGTAAACTACCAATATGATCAACAACACCAGATTGTGTTTGAAGCCACCAGAGGTGCATCAGTGAGGAGTGATATTGCAATCGATGATGTTACTTTTGAAAGGGGACCATGCAGAGAGGGATTGACGGGAAAAGAAATGGAGCTGCCGCAGAAGAGAAAACGAATAAGTCACGAATTAACCAACTCACAGTCCTCCAACCGCGAAGCGACACCATCCACCAGCACAAATGGCCAAGCAGGTGGTTTCGTGGAGGGCTCTATCCTCCGCATCACCATGCATAACTTCCTCACGTACGATCACTCAGAAGTTTTCCCCGGACCCAAACTCAACATGATCGTGGGAGCCAATGGCACAGGGAAGTCCAGTATCGTGTGCGCTATCTGCCTTGGCCTGGCTGGAAAAACAGCCGTCCTGGGCCGAGGGGACAAG

Function

symbol description
mamdc2b Predicted to be located in membrane. Orthologous to human MAMDC2 (MAM domain containing 2).

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000304_04536971_04554186.mRNA True 2700 mRNA 0.50 16 4536971 4554186

Neighbor

gene id symbol gene type direction distance location
CI01000304_04522897_04527887 SMC5 coding downstream 9084 4522849 ~ 4527887 (-)
CI01000304_04517750_04518058 NA coding downstream 18913 4517594 ~ 4518058 (-)
CI01000304_04458463_04459040 NA coding downstream 77737 4457613 ~ 4459234 (-)
CI01000304_04429949_04448465 NA coding downstream 88503 4429617 ~ 4448468 (-)
CI01000304_04396799_04405867 SGTB coding downstream 131104 4396788 ~ 4405867 (-)
CI01000304_04579087_04595306 TJP2, TJP2A coding upstream 24252 4578438 ~ 4596340 (-)
CI01000304_04661808_04672936 PPWD1 coding upstream 107580 4661766 ~ 4672947 (-)
CI01000304_04789939_04792844 NA coding upstream 235253 4789439 ~ 4792844 (-)
CI01000304_04809176_04857217 CWC27 coding upstream 254990 4809176 ~ 4857217 (-)
CI01000304_04894865_04896532 CSN4, COPS4 coding upstream 340679 4894865 ~ 4896705 (-)
G421757 NA non-coding downstream 90297 4445389 ~ 4446674 (-)
G421742 NA non-coding downstream 171950 4364735 ~ 4365021 (-)
G421741 NA non-coding downstream 172370 4364278 ~ 4364601 (-)
G421740 NA non-coding downstream 173235 4363466 ~ 4363736 (-)
G421728 NA non-coding downstream 201029 4335724 ~ 4335942 (-)
G421780 NA non-coding upstream 67770 4621956 ~ 4623620 (-)
G421782 NA non-coding upstream 70514 4624700 ~ 4624922 (-)
G421783 NA non-coding upstream 71126 4625312 ~ 4625545 (-)
G421785 NA non-coding upstream 78003 4632189 ~ 4632647 (-)
G421787 NA non-coding upstream 79531 4633717 ~ 4633947 (-)
CI01000304_04263955_04264962 NA other downstream 271770 4263846 ~ 4265201 (-)
G419354 NA other downstream 2270730 2262502 ~ 2266241 (-)
G419353 NA other downstream 2300865 2229384 ~ 2236106 (-)
CI01000304_06480836_06483554 SUB1L2, SUB1A, SUB1 other upstream 1923265 6480743 ~ 6483986 (-)
G422354 NA other upstream 2076900 6631086 ~ 6631499 (-)
G422378 NA other upstream 2190493 6744679 ~ 6783046 (-)
G422810 NA other upstream 3075973 7630159 ~ 7652703 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_002665 mamdc2b coding NC_007121.7 CM002894.2 15648857 ~ 15672862 (-)