RNA id: CI01000304_04396799_04405867.mRNA


Basic Information

Item Value
RNA id CI01000304_04396799_04405867.mRNA
length 901
RNA type mRNA
GC content 0.47
exon number 9
gene id CI01000304_04396799_04405867
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 4396788 ~ 4405867 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGCTATTTCCGGCGAGACGGCGCATGCGCTGTGCTGCGCATCATCAGTCTCACGCGAGTGTTCATGACGCGGTGGCTGAAACGAGCGCTGCGGGCACTTTCTCCAGGTTTCTCCCAGACAAAATGGCAGTGGAAAAGCGCTTGGCATATTCTATCGTGCAGTTTCTCAGAGATCAGACACACTGTGGCTCGCTGAATTCAGATGAACAGGAAAGCCTGGAAGTTGCCATACAGTGTCTCGAGACCACGTTCAAGATCAGCTCCAGTGACTGCCATCTTGCCGCCCCTCAGCCACTGAGAGAGATATTCCTCAACTCTCTCCTCAAAAATGATATTGTTACGTTACCTGAGACGTTTCCATCTGCAGAGGATATTGAGAGAGCTGAGCAGCTTAAAAATGAGGGCATGTCAACTTTCCTAATGTATTTAGACTCAAAACACTGGAATAACCACATGAAAGAGGAGAATTATAGCAGTGCCGTGGACTGTTATACAAAAGCCATTGAGTTGGACCAAAGAAATGCAGTCTATTACTGTAACAGGGCTGCGGCACACAGTAAACTTGGAAACTACACAGAGGCTACGGGAGACTGTGAACGAGCAATTGCGATTGACCCATCATACAGTAAAGCTTATGGCAGAATGGGATTGGCACTAACTTCTATGAGCAAGTATCCAGAAGCGATATCTTATTTTAATAAAGCTCTGGTGTTAGATCCTGAAAACGACACCTACAAATCCAACCTAAAGATTGCAGAGCAGAAACAAAAAGAAGCATCCAGTCCTACGGCCACAGGACTGGGGTTTGACATGGCCAGCCTCATCAATAACCCCGCTTTCATTAGCATGGCTGCCAGTGTGATGCAAAACCAGCAGGTGCAACAACTGTAAGTTTAAATAAA

Function

GO:

id name namespace
GO:0005575 cellular_component cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU484373 lncRNA downstream 31767 4364735 ~ 4365021 (-) True G421742
TU484372 lncRNA downstream 32187 4364278 ~ 4364601 (-) True G421741
TU484371 lncRNA downstream 33052 4363466 ~ 4363736 (-) True G421740
TU484359 lncRNA downstream 60846 4335724 ~ 4335942 (-) True G421728
TU484352 lncRNA downstream 81815 4312359 ~ 4314973 (-) True G421723
TU484388 lncRNA upstream 39522 4445389 ~ 4446674 (-) True G421757
TU484411 lncRNA upstream 216089 4621956 ~ 4623620 (-) True G421780
TU484414 lncRNA upstream 218833 4624700 ~ 4624922 (-) True G421782
TU484415 lncRNA upstream 219445 4625312 ~ 4625545 (-) True G421783
TU484417 lncRNA upstream 226322 4632189 ~ 4632647 (-) True G421785
CI01000304_04370274_04377315.mRNA mRNA downstream 19307 4370274 ~ 4377481 (-) True CI01000304_04370274_04377315
CI01000304_04269487_04273391.mRNA mRNA downstream 123397 4269202 ~ 4273391 (-) True CI01000304_04269487_04273391
CI01000304_04263955_04264962.mRNA mRNA downstream 131826 4263846 ~ 4264962 (-) False CI01000304_04263955_04264962
CI01000304_04253975_04256004.mRNA mRNA downstream 139186 4253411 ~ 4257602 (-) True CI01000304_04253975_04256004
CI01000304_04230808_04231542.mRNA mRNA downstream 164887 4229815 ~ 4231901 (-) True CI01000304_04230808_04231542
CI01000304_04429949_04448465.mRNA mRNA upstream 23750 4429617 ~ 4448468 (-) True CI01000304_04429949_04448465
CI01000304_04458463_04459040.mRNA mRNA upstream 51746 4457613 ~ 4459234 (-) True CI01000304_04458463_04459040
CI01000304_04517750_04518058.mRNA mRNA upstream 111727 4517594 ~ 4518058 (-) True CI01000304_04517750_04518058
CI01000304_04522897_04527887.mRNA mRNA upstream 116982 4522849 ~ 4527887 (-) True CI01000304_04522897_04527887
CI01000304_04536971_04554186.mRNA mRNA upstream 131104 4536971 ~ 4554186 (-) True CI01000304_04536971_04554186
TU484322 other downstream 131587 4263745 ~ 4263808 (-) True G421708
TU481702 other downstream 2130547 2263092 ~ 2266241 (-) True G419354
TU481700 other downstream 2131448 2262738 ~ 2265340 (-) False G419354
TU481701 other downstream 2131603 2262502 ~ 2265185 (-) False G419354
TU484147 other upstream 255949 4661816 ~ 4666212 (-) False CI01000304_04661808_04672936
TU484137 other upstream 265505 4671372 ~ 4672947 (-) True CI01000304_04661808_04672936
TU484955 other upstream 2071584 6477451 ~ 6479033 (-) False G422250
TU484956 other upstream 2071584 6477451 ~ 6479033 (-) False G422250
TU484957 other upstream 2071584 6477451 ~ 6479033 (-) False G422250

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00004950 True 2090 mRNA 0.41 12 NC_007121.7 15381972 ~ 15405564 (-)