RNA id: TU484411


Basic Information

Item Value
RNA id TU484411
length 357
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id G421780
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 4621956 ~ 4623620 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GAGACCCGATTCCTGGGGGGACTCGATTTCTCACCAGTTAGTTCACCCAAAAATGAAAATAATGTCATTTATTACTCACCTTCATGTCATAGGTGATCTGGGAAATGCTAACTTTAGACTGCTAGCATTTAAAGCATAAAATCCCACCCTCAGTGCAAATCACCGTCCAAAGCCACACCTCTTCCAAAACACATGAAAGTGCACAGACCAGAAGCGAGACGACCTGAGACAACGTTATTGGATTACATCATGTGTCATTTACCGATTCACACACTCCGGTTAACTCGTATAACTCGTAACTGCTGTTTTCCTCTCATGAGCTCCCTCTGTTGCTCTGGCTGAAAGGATCGTCCTCGG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU484388 lncRNA downstream 175282 4445389 ~ 4446674 (-) True G421757
TU484373 lncRNA downstream 256935 4364735 ~ 4365021 (-) True G421742
TU484372 lncRNA downstream 257355 4364278 ~ 4364601 (-) True G421741
TU484371 lncRNA downstream 258220 4363466 ~ 4363736 (-) True G421740
TU484359 lncRNA downstream 286014 4335724 ~ 4335942 (-) True G421728
TU484414 lncRNA upstream 1080 4624700 ~ 4624922 (-) True G421782
TU484415 lncRNA upstream 1692 4625312 ~ 4625545 (-) True G421783
TU484417 lncRNA upstream 8569 4632189 ~ 4632647 (-) True G421785
TU484419 lncRNA upstream 10097 4633717 ~ 4633947 (-) True G421787
TU484427 lncRNA upstream 24932 4648552 ~ 4648965 (-) True G421794
CI01000304_04579087_04595306.mRNA mRNA downstream 25616 4578438 ~ 4596340 (-) True CI01000304_04579087_04595306
CI01000304_04536971_04554186.mRNA mRNA downstream 67770 4536971 ~ 4554186 (-) True CI01000304_04536971_04554186
CI01000304_04522897_04527887.mRNA mRNA downstream 94069 4522849 ~ 4527887 (-) True CI01000304_04522897_04527887
CI01000304_04517750_04518058.mRNA mRNA downstream 103898 4517594 ~ 4518058 (-) True CI01000304_04517750_04518058
CI01000304_04458463_04459040.mRNA mRNA downstream 162722 4457613 ~ 4459234 (-) True CI01000304_04458463_04459040
CI01000304_04661808_04672936.mRNA mRNA upstream 38146 4661766 ~ 4672936 (-) False CI01000304_04661808_04672936
CI01000304_04789939_04792844.mRNA mRNA upstream 165819 4789439 ~ 4792844 (-) True CI01000304_04789939_04792844
CI01000304_04809176_04857217.mRNA mRNA upstream 185556 4809176 ~ 4857217 (-) True CI01000304_04809176_04857217
CI01000304_04894865_04896532.mRNA mRNA upstream 271245 4894865 ~ 4896705 (-) True CI01000304_04894865_04896532
CI01000304_04914520_04932141.mRNA mRNA upstream 290900 4914520 ~ 4932141 (-) True CI01000304_04914520_04932141
TU484322 other downstream 356755 4263745 ~ 4263808 (-) True G421708
TU481702 other downstream 2355715 2263092 ~ 2266241 (-) True G419354
TU481700 other downstream 2356616 2262738 ~ 2265340 (-) False G419354
TU481701 other downstream 2356771 2262502 ~ 2265185 (-) False G419354
TU484147 other upstream 38196 4661816 ~ 4666212 (-) False CI01000304_04661808_04672936
TU484137 other upstream 47752 4671372 ~ 4672947 (-) True CI01000304_04661808_04672936
TU484955 other upstream 1853831 6477451 ~ 6479033 (-) False G422250
TU484956 other upstream 1853831 6477451 ~ 6479033 (-) False G422250
TU484957 other upstream 1853831 6477451 ~ 6479033 (-) False G422250

Expression Profile