RNA id: TU484415


Basic Information

Item Value
RNA id TU484415
length 234
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G421783
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 4625312 ~ 4625545 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTAGTCCTGAGAGACATGCCAGTAAAAATAAGAAACAATTGATTTGTAAGATGAGAAATCAAGTTTATTTTCTAAAATCAAAATAAAACTGAACACCTCAATGTTGCAGTAAATCAAGGTCGACACAACAACCTTTTAAACGTCTACAAACTCTCAAGTCTCAGTTGAGCTCAAGTGCACAGAAAGGCCATAAGTAAACCATTATCCTTCAAAACGGTCTTGTCAATATAGCGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU484414 lncRNA downstream 390 4624700 ~ 4624922 (-) True G421782
TU484411 lncRNA downstream 1692 4621956 ~ 4623620 (-) True G421780
TU484388 lncRNA downstream 178638 4445389 ~ 4446674 (-) True G421757
TU484373 lncRNA downstream 260291 4364735 ~ 4365021 (-) True G421742
TU484372 lncRNA downstream 260711 4364278 ~ 4364601 (-) True G421741
TU484417 lncRNA upstream 6644 4632189 ~ 4632647 (-) True G421785
TU484419 lncRNA upstream 8172 4633717 ~ 4633947 (-) True G421787
TU484427 lncRNA upstream 23007 4648552 ~ 4648965 (-) True G421794
TU484428 lncRNA upstream 23820 4649365 ~ 4649665 (-) True G421795
TU484200 lncRNA upstream 44109 4669654 ~ 4670066 (-) True G421601
CI01000304_04579087_04595306.mRNA mRNA downstream 28972 4578438 ~ 4596340 (-) True CI01000304_04579087_04595306
CI01000304_04536971_04554186.mRNA mRNA downstream 71126 4536971 ~ 4554186 (-) True CI01000304_04536971_04554186
CI01000304_04522897_04527887.mRNA mRNA downstream 97425 4522849 ~ 4527887 (-) True CI01000304_04522897_04527887
CI01000304_04517750_04518058.mRNA mRNA downstream 107254 4517594 ~ 4518058 (-) True CI01000304_04517750_04518058
CI01000304_04458463_04459040.mRNA mRNA downstream 166078 4457613 ~ 4459234 (-) True CI01000304_04458463_04459040
CI01000304_04661808_04672936.mRNA mRNA upstream 36221 4661766 ~ 4672936 (-) False CI01000304_04661808_04672936
CI01000304_04789939_04792844.mRNA mRNA upstream 163894 4789439 ~ 4792844 (-) True CI01000304_04789939_04792844
CI01000304_04809176_04857217.mRNA mRNA upstream 183631 4809176 ~ 4857217 (-) True CI01000304_04809176_04857217
CI01000304_04894865_04896532.mRNA mRNA upstream 269320 4894865 ~ 4896705 (-) True CI01000304_04894865_04896532
CI01000304_04914520_04932141.mRNA mRNA upstream 288975 4914520 ~ 4932141 (-) True CI01000304_04914520_04932141
TU484322 other downstream 360111 4263745 ~ 4263808 (-) True G421708
TU481702 other downstream 2359071 2263092 ~ 2266241 (-) True G419354
TU481700 other downstream 2359972 2262738 ~ 2265340 (-) False G419354
TU481701 other downstream 2360127 2262502 ~ 2265185 (-) False G419354
TU484147 other upstream 36271 4661816 ~ 4666212 (-) False CI01000304_04661808_04672936
TU484137 other upstream 45827 4671372 ~ 4672947 (-) True CI01000304_04661808_04672936
TU484955 other upstream 1851906 6477451 ~ 6479033 (-) False G422250
TU484956 other upstream 1851906 6477451 ~ 6479033 (-) False G422250
TU484957 other upstream 1851906 6477451 ~ 6479033 (-) False G422250

Expression Profile