RNA id: CI01000304_04522897_04527887.mRNA


Basic Information

Item Value
RNA id CI01000304_04522897_04527887.mRNA
length 1626
RNA type mRNA
GC content 0.48
exon number 11
gene id CI01000304_04522897_04527887
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 4522849 ~ 4527887 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTTGATGACATCAGACAGGACCTGAGTCTGAAGCAGACGGAGGAGACGGACCGGCAGAAGCGGATTGGACACACACAACTCATGATCAGAGACCTGCAAAGGGAGCTGCAGAACATGGACAGCATGGAGGACGTCACACCTCAGATTGAGGCTGTTAACGCAGAGCTAAAGAACATCCAGGAAGAAAAAGCCAAACTGGAGAGCGAGAGTTTGGACCTGCGCAGAGATAAAGACGAAGCTAAAGGAGAATTTATGCGTTTGCAGAATCGTCTGAGGAGTCTGGAGGACATGATGAAGGTAAAAGAGGATAAACTGCGCAGCCGTTTCAATGACACCTACAAGGCCCTCATGTGGCTGAGGAATAACCGTGACCGTTTTGAAGGCAATGTCCACGAGCCCATGATGCTGGTGATAAATGTCCGTGATGCTCGGCACGCAAAATACATTGAGAGTCACATTCCTCTAAACGACTTAAGAGCCTTCGTATTTCAGAGACAGGAGGACATGGAGAGGTTCATGGCAGAGGTGCGAGACTCACAGAAGCTACGAGTCAACAGCGTCATCGCTCCAGTGGATTCCTGCTCTAATAGACCACCATCACGATCCCTCGAGACTCTAAAGCGTTACGGCTTCTTCTCGTACTTGCGTGAGCTGTTTGATGCTCCTGAGGAGGTCATGAGTTACTTGTGCTATCAGTACAAAGTCAATGATGTACCTATAGGAACAGAGAAGACAAAGAGCATGATCGAGATGGTGATCAAAGAGGTTCAGTTGAGGATGATCTACACAGCGGAGGAGAAGTACACCGTGAAGAAATCCTACTACTCTAATAACGTGGTCTCCAGTAACTCGGCCCTGCGGCCCTCACAGTTCCTCACTACGACCATAGATGCAGATGAGAGACGCCAACTGGAGGAGCAAATGAGAGCAGCAGAGAGGCAGATGCAGAGAATTGATGAACGGATGGCGGCCATTCGCGAGCAGCAAACTAAACTAGACCGCCGTGATAATGAGCTACGTGCTAAGAAGAAGAAACTGTCTGAGCTGAAAGGCAAGAAGAGACAACTGGAGCAGAAAATCAGTACAAAACAGGATAGTTTGAGGCAGATGGAGCAGAATGAGATAAACTTGCAGGCAATTGAAGAGGAAACGAATTCCAAGATCGCTGTTGTAAACAACAAGAAAGTGGCCATAATGGAGGAGTATTTGAGACACATGCAGTCGAAGGCCAGGTTGAGTATGGAGAAGGTGTACTTGGCTCTCCAGAGCGCAGGTCTCTCCGCTGAGAAAACCAAACTGGAGACAGACTGCAGGGACAGTTCAACTGAACTCAAGCGAGCAGAGGTAGCATATACTAAGCTGGACCAGAAAAAGAACGATCTGCTGACCAAATGTAAGAACCTGATGAAGAGGGCCATTGAGATCTGTAACATGATTCCTGGAGAGACAGCGGTCCCAGAGGAACTACATGCAGCCTTCAGTCAGTTACCTGATACACTGGATGAGATTGATGTCATGTTGAATGAGGAGAAGACCAGAGCGGAGTGCTTCACCGGCCTCAGTGATGCTGTGAGATGAAAAACACATCAGATCATTCACACTTTGCCAAACCTCTGCCTTTTTAAA

Function

GO:

id name namespace
GO:0000724 double-strand break repair via homologous recombination biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU484388 lncRNA downstream 76175 4445389 ~ 4446674 (-) True G421757
TU484373 lncRNA downstream 157828 4364735 ~ 4365021 (-) True G421742
TU484372 lncRNA downstream 158248 4364278 ~ 4364601 (-) True G421741
TU484371 lncRNA downstream 159113 4363466 ~ 4363736 (-) True G421740
TU484359 lncRNA downstream 186907 4335724 ~ 4335942 (-) True G421728
TU484411 lncRNA upstream 94069 4621956 ~ 4623620 (-) True G421780
TU484414 lncRNA upstream 96813 4624700 ~ 4624922 (-) True G421782
TU484415 lncRNA upstream 97425 4625312 ~ 4625545 (-) True G421783
TU484417 lncRNA upstream 104302 4632189 ~ 4632647 (-) True G421785
TU484419 lncRNA upstream 105830 4633717 ~ 4633947 (-) True G421787
CI01000304_04517750_04518058.mRNA mRNA downstream 4791 4517594 ~ 4518058 (-) True CI01000304_04517750_04518058
CI01000304_04458463_04459040.mRNA mRNA downstream 63615 4457613 ~ 4459234 (-) True CI01000304_04458463_04459040
CI01000304_04429949_04448465.mRNA mRNA downstream 74381 4429617 ~ 4448468 (-) True CI01000304_04429949_04448465
CI01000304_04396799_04405867.mRNA mRNA downstream 116982 4396788 ~ 4405867 (-) True CI01000304_04396799_04405867
CI01000304_04370274_04377315.mRNA mRNA downstream 145368 4370274 ~ 4377481 (-) True CI01000304_04370274_04377315
CI01000304_04536971_04554186.mRNA mRNA upstream 9084 4536971 ~ 4554186 (-) True CI01000304_04536971_04554186
CI01000304_04579087_04595306.mRNA mRNA upstream 50551 4578438 ~ 4596340 (-) True CI01000304_04579087_04595306
CI01000304_04661808_04672936.mRNA mRNA upstream 133879 4661766 ~ 4672936 (-) False CI01000304_04661808_04672936
CI01000304_04789939_04792844.mRNA mRNA upstream 261552 4789439 ~ 4792844 (-) True CI01000304_04789939_04792844
CI01000304_04809176_04857217.mRNA mRNA upstream 281289 4809176 ~ 4857217 (-) True CI01000304_04809176_04857217
TU484322 other downstream 257648 4263745 ~ 4263808 (-) True G421708
TU481702 other downstream 2256608 2263092 ~ 2266241 (-) True G419354
TU481700 other downstream 2257509 2262738 ~ 2265340 (-) False G419354
TU481701 other downstream 2257664 2262502 ~ 2265185 (-) False G419354
TU484147 other upstream 133929 4661816 ~ 4666212 (-) False CI01000304_04661808_04672936
TU484137 other upstream 143485 4671372 ~ 4672947 (-) True CI01000304_04661808_04672936
TU484955 other upstream 1949564 6477451 ~ 6479033 (-) False G422250
TU484956 other upstream 1949564 6477451 ~ 6479033 (-) False G422250
TU484957 other upstream 1949564 6477451 ~ 6479033 (-) False G422250

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00004952 False 3831 mRNA 0.47 23 NC_007121.7 15617741 ~ 15644974 (-)