RNA id: TU484359


Basic Information

Item Value
RNA id TU484359
length 219
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G421728
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 4335724 ~ 4335942 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TATTTGGCACACCGCCTGTTTTATTTAGCTGATCAACTCTTGAAATCTGTGTGCCAAAAATGCGCGACTCACTGAACAGCGCAGAGAGAATGTAGTTACATTGTAGTGAAGTTCAAGTGCAGATCAGCAGTCCTGACTGTTGTTTTGAGCAATACACCGAGTTTATTTCATTAACACTGAGTATTAATTGATGTCTCTCAAAACAATGTTTAATTTTTT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU484352 lncRNA downstream 20751 4312359 ~ 4314973 (-) True G421723
TU484337 lncRNA downstream 31844 4303156 ~ 4303880 (-) False G421719
TU484335 lncRNA downstream 31844 4303448 ~ 4303880 (-) False G421719
TU484334 lncRNA downstream 31844 4303562 ~ 4303880 (-) False G421719
TU484339 lncRNA downstream 31915 4303448 ~ 4303809 (-) False G421719
TU484371 lncRNA upstream 27524 4363466 ~ 4363736 (-) True G421740
TU484372 lncRNA upstream 28336 4364278 ~ 4364601 (-) True G421741
TU484373 lncRNA upstream 28793 4364735 ~ 4365021 (-) True G421742
TU484388 lncRNA upstream 109447 4445389 ~ 4446674 (-) True G421757
TU484411 lncRNA upstream 286014 4621956 ~ 4623620 (-) True G421780
CI01000304_04269487_04273391.mRNA mRNA downstream 62333 4269202 ~ 4273391 (-) True CI01000304_04269487_04273391
CI01000304_04263955_04264962.mRNA mRNA downstream 70762 4263846 ~ 4264962 (-) False CI01000304_04263955_04264962
CI01000304_04253975_04256004.mRNA mRNA downstream 78122 4253411 ~ 4257602 (-) True CI01000304_04253975_04256004
CI01000304_04230808_04231542.mRNA mRNA downstream 103823 4229815 ~ 4231901 (-) True CI01000304_04230808_04231542
CI01000304_04227914_04228723.mRNA mRNA downstream 106581 4227120 ~ 4229143 (-) True CI01000304_04227914_04228723
CI01000304_04370274_04377315.mRNA mRNA upstream 34332 4370274 ~ 4377481 (-) True CI01000304_04370274_04377315
CI01000304_04396799_04405867.mRNA mRNA upstream 60846 4396788 ~ 4405867 (-) True CI01000304_04396799_04405867
CI01000304_04429949_04448465.mRNA mRNA upstream 93675 4429617 ~ 4448468 (-) True CI01000304_04429949_04448465
CI01000304_04458463_04459040.mRNA mRNA upstream 121671 4457613 ~ 4459234 (-) True CI01000304_04458463_04459040
CI01000304_04517750_04518058.mRNA mRNA upstream 181652 4517594 ~ 4518058 (-) True CI01000304_04517750_04518058
TU484322 other downstream 70523 4263745 ~ 4263808 (-) True G421708
TU481702 other downstream 2069483 2263092 ~ 2266241 (-) True G419354
TU481700 other downstream 2070384 2262738 ~ 2265340 (-) False G419354
TU481701 other downstream 2070539 2262502 ~ 2265185 (-) False G419354
TU484147 other upstream 325874 4661816 ~ 4666212 (-) False CI01000304_04661808_04672936
TU484137 other upstream 335430 4671372 ~ 4672947 (-) True CI01000304_04661808_04672936
TU484955 other upstream 2141509 6477451 ~ 6479033 (-) False G422250
TU484956 other upstream 2141509 6477451 ~ 6479033 (-) False G422250
TU484957 other upstream 2141509 6477451 ~ 6479033 (-) False G422250

Expression Profile