XLOC_026701 (mslna)


Basic Information

Item Value
gene id XLOC_026701
gene name mslna
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 43835558 ~ 43872889 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00051993
CAACACAACATAACACAACTCATGTCCTTTCAGGTGGAGGCTGTTCCTGTTCTCTCACTGACACAGCTGGGTGAACTGGTGTTCAGTCCTCCTGCTAGACCTGAAGACAGAGTCAACATCCTCACCAAAGTCTTTGACTTTCTTCTTCAAGCCTCTAACCGAGACAAACTCAATAGCTTCCTACCAGCTCTTCAGACACAGGCCAGAAAAGCAAACTTCAGCTGTGAAAATTACAAAACCATCTTTGACAGGGTGGATCAGGCATTATTATCAGTCTCTCCTAACCAGACTGAAGCCCTTCTGACCATCAGAGACTCACTTATGACGATTCCTCCTGACGAATGCATTCAGAGATCAAGCCAATGCACAGTGACTCCTGTAAATGAGACTGTCCTCTGTGCAAATATCAACAGCTCTGCTGTGGGTCAGGTCTTGAATGGTCCAAATACAACATCCTCGCTGAATTTATGTAATTTCACAGTGCTGGAGTTTGCCTGTCTGCCAACGCTGTCACAGGTAAACTCTCAACAACTGGCTGGTCTTTTGGCTTGTAAACTGAACAGCAATGTGACAAAAGAGACCTGGAAGCTTTTCCTCAGTAAAACCAGCACAAACCTTGATGACGCTCTGCTGAAGCTTTCTAACATGACTCTCGGTCCCAGCAATGTGTCTCTGTCGAATGTGCTGGATGTGATTGCTGACGTCCGCATCGATCGATTTAGTCCTCAGAGACTGAGAGATCCTGTCTTCATCCGCTCATGGTTTCAGAACAGACTAAAACCTTTCTTGCCATCAGTTTCCCAAAGTTTCCTGTCCTGTCTCAGCACCAAAAACCTCACCTGTGAAAGTTACAGCACTATCACTGAATCTTTTATCAATGCACCTCTACAAACTGTACAAGATGTCTGCAACCCACCTGTACCCAGTGGCACTCAGAAACAGGATCAGGTGTACAGGAATTTCATGAAAGCTTTCCTCTCACGCAGTGACACCAATGATCCTGGGTGCCTCAAAGACTCTGCCAACACCACTCTGTGGGTCAACAGATACTTTGGGCCATTAATTCAGTCTGCTAATCTGACGGAGCTTTTGGCACTTGACAGTAACTTCAAAACAGTGGAGGTTTTACCTGTTTTGAGTCTAAATCAACTGGTTGAGTTTTCCCTCACTCCTGGAGCTCTTGCAAATCCTCAAAGTGCTATCAAAGTCATGCAGCTTGTTAAGGATTGCCAGCTGCCCACCTTCTTTGACCGCTTTTCCcccaaattaaatGACATCCTGCTCACGCCTGATGTAAAAACAGCACTGATTAAACAGATATTTGACAGAGCCAACCTGTCTGATCTAAATACCGCTAATGGAGAAGTTCTGGTCTGGATTCAGACTAGACTCCCGCCTCTGTTATCCAACTTTTCAGAAAGCCTTGTGTCTCCATTTTTTACCATCCTCAATGCAAGGGACTGCAATATCACTCAATTCGCACTGAAGCTGTTAGGGGGAGTTGGACCTTCAATACCCCCAAATACCAAAAATGCAATCTACAATAGCATTCTTCAGTCCTTTGGAGGGCCACAGGGTCTGAGATGCTACAGAAACAACAGCTTCATGACATTTCTGAATCAAAGCCTGTTCAGTTTCGGGCCTCTTCCAAATCTGACCACCTTCCTCTCTCTGATCCCACCTGCTCGGATATCTGAGCTTTTAAACTCTTTTGCTCCTTCTGAGCTGGGCACCTACCTCAGACAGCTGAAAGTGCTGAACAACGATTCCCAAATCTGTGTCATCTTTAACACCTTTACCAGAACCCCTGATTTCCTGGAGAATGAGGATGTTCCAGATAATATAAGGAGGGCCATACTTCCCTGTGTTTGGCCGATGGCGTTGACTAGCGACAACCAGACGGAGATTAATTTGTGGTTTGATCGTAGATTAAAGCTCTACTTGAAGTTTCTAAACAAAGATCTAATCGGGTCAAAAGACACCCTGAGCTCATCCTGTCTGTCGTACAGGAAAATGATCAATGTTTTAGGCAACAGTTTTACATTCAGCGGTTCCCAGATTACTTCTAATGATGTATACTCTACCATCAAGACATATCTGAAAGCAGactCTACACCAAAATGCTATGATGCTTCTAATCCAAAACTGAGCTCAACTGCATGGTTTTCCAACTACATCGGTACATTTATAACTTTCTTGAATCTAGACGACCTCTACACTTTTGGCTCAGATAGTGCGATTCAGATCTTTACTGTGGACCCAGACAACATCAATCTGTTCAAACAAAAGAACCTTCCAAACAACCTGACCAGCCACTACACACAACTCCTTTTTCAACAGAACCCCAGCTTTAATGTTTTAGACCTACCTACATTTCTGCAGTGCAGTGCCCCAGCATCCACCTTCACAAAACTTGACGAGACTCAGACTAACGCTATTCTTGGAAACTTCAAAACATCTTGCTCTGGTGTAGATCCTGCAATATCCACTGCACTTGCGGGAAACATCAAAACCATCAGTGCTAATGTCATTAGCAACATGGGAAGTGAGATTGTTGGTCTTACAACTGTCCAACTGAATGCAGCACCTCCAGACGTCCTCATCAGTAGTCTCTCAACGTTGACCACTGTGTCTGGGTGGAACTTCGGGCAAGCCAAGACTATCATAAAAGTGCTTCTTAGTGGTTCATATCAGCTCACCAGTCCCACCAATTTGGTGAATCTTGGACCACTGATAACAGGAATCCCTTCAACGGTGCTGACAAGCATTGACCCAGTCCAAATTGTCACAATGACTCAAAACGTACAATTTGTAAATAACATGCTGGCGGCCCCAGAGATTGTCCAGAAGACTTTTGTAAACCAGataataaAAGTTAATACAGAACCAAGTGTGCTAATGCAAAACATTCCCAGTGAATTGGCCGTTCAAATCCCAAGAAACCTTCTGGACATTCCCTCCACTGTAAACACGGTCGTCATACAACAGTTTAACAataaaaagtggaaacctgaacAGGCAGTTCTGTTCTTTGATTCTGTTGCAAATGCTTTCGATCAAGCTGATGACTTGTCAGTGCCAGTTTTGCAAGGATTTACATGTTCCCGAGTGCAGACCTTCACCAAAACTAAAATCCGAGGTCTGATCAAAGCCTGCCGCCGGAGGCCAAACAGACAAACAGTGATACTTAGTGAGACTCAGCTGACTTGCATGTACAACCTGATCAGAAGGGACTCACCTCTGGATTTTTTCAACTATCATCCAAATATGTTGTTGTACTACAATTATGACACCATCAACAAAACCATCTGCAGAGACTATTTTACTGCAGTCGGAGCAGCAGATCTCTCAATCTTTTCAAGCACACTGAGAGGAAGAAGGGACATCTTGTGGAGTAATGCTGTAGATTGCTTGgcCATTAACGGAACAAGCATCCGGAAACAGGATCTGACAGTGCTGGGCAATTTGGTGTGTGTTGTGAGCagtgactacattacaaactcagATCCAGAAATCCTGGAGAACTTAAAGAACTGCAACGAACTCTCGGTTTCCCAAATAGCAGCCATGGAAGCTGTCATCATGAAGGGAACTACTAAATATGGaccaaCAAGCAAGTGGAATCAGAAAACGCTTAACGATTTGGGAATTTTGCCATTGCACTTCTCACAAAACTTTTGGGGATCATTCCAGCAGattGATACGAGCACCTTCTTGAAAAGCTTCCTGAAATTTCTGCGTGGGCAAAACACACCAAAACTACTCATGAAAAGGCTGTTTAAAGCAATCATCATACCAGTAAAAAGAGCCAAGAGAGCAGCGGGTGACTGTACGGCAGGCAACATCACTAGTGTGACCATCAGCAATGACGCCTTCCCCTTTGGCTACGACGAGACTCAGTTCGGCAACTGTCTGAGTGCTGATGTGGTGAGGGATAATCTCGGCAGTCTGTGTGAAAAAATCGACGATAGCGGCTTTCAGAGAATCATTTTGGACAGACTTAAACAGATTTATCCGAACGGCCTTTCAGACGATCAGGTCCAGGTGCTGAAGTCCGTTTCCAGGAATGTGTCGCTAGATGAAGTGAGTAAATGGAACATCACTAAAGTCGACACACTGGCTGCACTCATGAACACAAACGATGGCGATTGGTCTTCTGAACAGAGCAAGCAGATCATCAGCCAATACCTAAGCGCTGGCAATAATCTGACAGCCACTGAGCTCAATCTGATTAAAGGACCAAATCTCTGCTCGATGGATACCAGCACAATATCAACAATACTGCCTGAAAGTATACGGGGCAGCGATGCTTTGAATGTGTCAAAATGCTCCTCTGCCAATAAGCAGGCGCTCTTCACCATAGCTAGCAAGGCATTCCCCATGACAAAAGCTATTGACACACGTGCCGCCCTGTCATCTTTCCAGCTCATTGAACCCTTTCTTGGAGGTGCAGATCTAAATTACATAAGAACTCTGTCATCATATAACATCAGCATGAGCCTGTCCACTTTCACAAATCTGGATCCGAACGTCATCAATAGCCTCACTGTGTCAGATGTAGTGGGTCTTCTTGGTAGCAATTTGCAGGATCTGAAAACATATGAAAACCAAACGGCAGTGCGGAACTGGATCTCGCTGCAGTTACAGTCAGAGCTGAATAATCTTAACATCAGTCTGACCGGAGGAAAAGCGACGGCTGACACGACCACTGCTGCACCGACTACAGCAAGTAGCACCACTTTGAACGCTGCAGCTGCTTCAACTTCCTCTAGCGCTGCTACGATTGTCACTAGCACTAACATTACTATTGCTTCTGCCACTGCCAACACTACTTCAGCCGCTACAGgAGTTGGATACAGCATGCCATTCAGCATATTTGTACTCGTTCTTACCATCTTCAAAGTGGAGATTATTTAGCCCTGACCTCAAATCTGCCACACTGTAATTTAACCACGAGGATTAATCTGGAAGTTTCCTGTTAATGATGATATATAGTATACAATTAAGGGCAAAATAATTAGCTGACTTTattagcaaagataaaataaaccagttaatagaaatgagttgttaaaactattatgtttagaaatgtgttgaaataatttctcagttaaacagaaattgggagaattaaaatttaataggaaggctaatacttctgacttccgCTGTATAtgattataatcacatttattttagatttatctTATTGAATCAAGTGATTTTAAGTATATTAACATCAGTCCTATATGGCATTGTGATTGAGGTATGGAAACAGAAGAGGTGCAGTAATATCCAAAGCAAAGGGCACTGTATGTAGCATctagatttaaatatttatttcattccCTGCTTTTAAAGCTTCTATATTTAAGTGTTTCTAACATTGAGAATAGTCATAAATGCTATTGTTTctgctgtatttaaaaatatgacaATTGGAAGTGTGACTTGTACCTGTTTTATGATCAAAAAACAATGTCATGTTAACAAAAAGAAACGAATAAAAGGCACTGATGAACAAATTAAGGCTGTGTGTTTTACAAGTCTCAACTGAAGATTCTAAAGAACCAACTAACTTTATTATAACATGATTATTTATATCTGAAAAGGTTAtaatttggtgaaatatttgtgtACGGTAGAGGTAATGTAAAGtaattaatgtgtatttatagcgcatttattgtgtatggtcatacaccccaAGCG

Function

symbol description
mslna Predicted to be involved in cell-matrix adhesion. Predicted to be located in membrane. Predicted to be active in cell surface. Human ortholog(s) of this gene implicated in ovarian cancer; pancreas disease; pancreatic cancer; and pancreatic ductal carcinoma. Orthologous to human MSLN (mesothelin).

GO:

id name namespace
GO:0007160 cell-matrix adhesion biological_process
GO:0009986 cell surface cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-120727-9 Predicted to be involved in cell-matrix adhesion. Predicted to be located in membrane. Predicted to be active in cell surface. Human ortholog(s) of this gene implicated in ovarian cancer; pancreas disease; pancreatic cancer; and pancreatic ductal carcinoma. Orthologous to human MSLN (mesothelin).

Ensembl:

ensembl_id ENSDARG00000098949

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00051993 True 5715 mRNA 0.43 38 43835558 43872889

Neighbor

gene id symbol gene type direction distance location
XLOC_026700 rmi2 coding downstream 503 43828545 ~ 43835055 (-)
XLOC_026696 snn coding downstream 14177 43347517 ~ 43821381 (-)
XLOC_026699 zgc:92162 coding downstream 64682 43757181 ~ 43770876 (-)
XLOC_026698 axin1 coding downstream 149089 43578975 ~ 43686469 (-)
XLOC_026697 uncx coding downstream 479476 43352556 ~ 43356082 (-)
XLOC_026703 BX682557.1 coding upstream 5567 43878456 ~ 43889443 (-)
XLOC_026704 ubfd1 coding upstream 69143 43942032 ~ 43959873 (-)
XLOC_026705 il4r.2 coding upstream 129411 44002300 ~ 44012804 (-)
XLOC_026706 il4r.1 coding upstream 176018 44048907 ~ 44060037 (-)
XLOC_026707 kdm8 coding upstream 208731 44081620 ~ 44094451 (-)
XLOC_026695 NA non-coding downstream 646473 43187194 ~ 43189085 (-)
XLOC_026694 NA non-coding downstream 808823 43024821 ~ 43026735 (-)
XLOC_026691 CABZ01079183.1 non-coding downstream 969358 42866083 ~ 42866200 (-)
XLOC_026690 NA non-coding downstream 1088774 42548944 ~ 42746784 (-)
XLOC_026689 NA non-coding downstream 1461959 42371784 ~ 42373599 (-)
XLOC_026708 NA non-coding upstream 238656 44111545 ~ 44124370 (-)
XLOC_026709 NA non-coding upstream 459858 44332747 ~ 44335853 (-)
XLOC_026716 NA non-coding upstream 1666897 45539786 ~ 45543451 (-)
XLOC_026719 NA non-coding upstream 1959188 45832077 ~ 45843700 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000046_02006028_02024639 NA coding CI01000046 null 2006028 ~ 2024940 (+)