XLOC_026700 (rmi2)


Basic Information

Item Value
gene id XLOC_026700
gene name rmi2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 43828545 ~ 43835055 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00051992
atttttttcctctcatCTAAAAAAAACAGCGCGGTTTTTATTTTTCACCCGGGGTTCAGAAGATGATGGGGGCGAGTTTTCTGAGCGCAGACCGGGCTCGCAGTCCGCCGGTGAAGGTGCTGTCCAGTCAGCTGCGGGAAGCCTCGGAGAGCCAGAGCTCCGGTGGGAAAGCGGAGGTTGTGATCCGGCGTCTGGGAGCTTCTGGCCGGCGTTCGCTGCAGGTGTCAGTGGTGTGGATGCAGGGGACTGTACTGGAGCTCCAGGCTGACAACAACACCCTCCTCATGCTGGATGAGACCGGAAACTTTACTGTTAACGGCATCAACAGCGTGCCGAAAGGAAAACCCTGCCTGAGTCCCGGTAAATACGTCATGGTTATGGGTGTCATCCAGTCTCACAGTCCAGAACCAGTCCTGCGAGCTGTGAAAATGGCAGACCTTTCTGCAAACGCAGCCATTCACAGGAGAAACTGGATCTATGAAGTGGAAGATCTCCAGCGGGTTTTgccctaatagtgtttttttttttactcattacgATGATTATTTTTGCAGCGCTGCATTTATTAGTTTGTTCAACACTATGTTGCTCTGACTTTTATTTGCAAATGACATCTCCTGATGGACACACAGACATTTAAGTGagatatacattttatttctagAATTATTTTCTATGAAAGTTTAAGTGGAATTACACCGTAATTAAGCTTTAATCACAAACAAAAGAGATTTCCTTACAGTTCTGCTattaaattatacaataaaaaaagattacattTAATTTTCAGTGAAATCAGAGTTTACAGAGGTAAGACAGTTATGATCATTTTAATAAAGACAgctaaggaaaataaataaattaagagactgcttgaaaattctcagtttctctagATTTATGATATTACaaatttgaatatttgtttttattaataaagatCTGATAATGACAGAATGGGTCATGGAATAGCAAATGTTTTCAAGTGCTCTTATTCGTATTTATTTTTCCTCCAtagctgtaaatgtgcatgtgtgaatgtgtatgtatgATCACATGTCAGTTTGTGAGTGGCACAGATTGGTGAATCATCTCTTACTCAAAGAATGAATTCGCTGTAACTTCCTTCCATCTTAAATGCACAGTAGCTGTGTTTCCCAGCTCTGGAGGGACTTCAGAATCTCTTGTGCACCCCTAAAACACTGCTGCAGTTTGGACAGTGGTGCGTGACGTCCTTCAGGTCCTCTATGCAGAAGGGAATTAGGCAGCAGCCGTAGATGCAGCTGGGACAGCAGGAGGAGGAGCATCAGCTGAGAGTCTTTCTGCAGTATATTGAGATAGTCATGTTTTAACTTACCCAAAAACGGCCAGTCCTGCACAGGAGAGCCAGACTAGGGGTCCTGAGGAGTACTCCAGACGAGTGATGACGGACTGTGAACACACTGGGCAGTGAGCCTGAACCGGGACGTTACCAAACACCAGGCCAGGCTGAACATAGACTGTCTGGACGGCTACTGAAGAGCAGACAACAAGAAATGTGCTTGTTATTAAAAGCTTTCTTAACTTTAAATGTAAGGGCCTTGATGGAAAAGGATGCAGGTTGTTTTGATTCTCAGCTGAtggttttttttccccccaacaaaaagtaaacatttataaaacatttataaaactacagcagggggtgcccaaactcattcctggagggccagtgtcctgcatattttagttccaaccccaattaaacacacctgaaacagctaATCAAACTCATTAGATACTTCCAGACAGGTCTGTTGAAGAAAGCTGGAGATAAACAATGCAGGACTGGCCCTCCAAGTCTGGAGTTTGGGCACCCCCTGCTGTAAAGCATAGGTGTCAAAATCTATTCCTGgagtgccgcagctctgcacagtttagctccaaaacacagctgatccaactaatcaaggtgttcaagactactagagactattaagcaggtgtaagttggaggtggttggagataaactgtgcagagctgtggcccttcaggaattgagtttgagaccattgctgtaTAGTGAGATAATGGAGTAGCTGGCCAGGTTCctctgtttgtttgttattggttGTGACTAATGACATATTTTCCGattgtattaataaatactacatatacgta

Function

symbol description
rmi2 Predicted to be involved in DNA metabolic process; negative regulation of double-strand break repair via homologous recombination; and regulation of sister chromatid segregation. Predicted to be active in cytosol and nuclear speck. Orthologous to human RMI2 (RecQ mediated genome instability 2).

GO:

id name namespace
GO:0043007 maintenance of rDNA biological_process
GO:2000042 negative regulation of double-strand break repair via homologous recombination biological_process
GO:0033045 regulation of sister chromatid segregation biological_process
GO:0006281 DNA repair biological_process
GO:0005829 cytosol cellular_component
GO:0016607 nuclear speck cellular_component

KEGG:

id description
ko03460 Fanconi anemia pathway
ko03400 DNA repair and recombination proteins

ZFIN:

id description
ZDB-GENE-131125-13 Predicted to be involved in DNA metabolic process; negative regulation of double-strand break repair via homologous recombination; and regulation of sister chromatid segregation. Predicted to be active in cytosol and nuclear speck. Orthologous to human RMI2 (RecQ mediated genome instability 2).

Ensembl:

ensembl_id ENSDARG00000103137

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00051992 True 2164 mRNA 0.43 2 43828545 43835055

Neighbor

gene id symbol gene type direction distance location
XLOC_026696 snn coding downstream 7164 43347517 ~ 43821381 (-)
XLOC_026699 zgc:92162 coding downstream 57669 43757181 ~ 43770876 (-)
XLOC_026698 axin1 coding downstream 142076 43578975 ~ 43686469 (-)
XLOC_026697 uncx coding downstream 472463 43352556 ~ 43356082 (-)
XLOC_026695 NA coding downstream 639460 43187194 ~ 43189085 (-)
XLOC_026701 mslna coding upstream 503 43835558 ~ 43872889 (-)
XLOC_026702 BX682557.2 coding upstream 31730 43866785 ~ 43875129 (-)
XLOC_026703 BX682557.1 coding upstream 43401 43878456 ~ 43889443 (-)
XLOC_026704 ubfd1 coding upstream 106977 43942032 ~ 43959873 (-)
XLOC_026705 il4r.2 coding upstream 167245 44002300 ~ 44012804 (-)
XLOC_026694 NA non-coding downstream 801810 43024821 ~ 43026735 (-)
XLOC_026691 CABZ01079183.1 non-coding downstream 962345 42866083 ~ 42866200 (-)
XLOC_026690 NA non-coding downstream 1081761 42548944 ~ 42746784 (-)
XLOC_026689 NA non-coding downstream 1454946 42371784 ~ 42373599 (-)
XLOC_026708 NA non-coding upstream 276490 44111545 ~ 44124370 (-)
XLOC_026709 NA non-coding upstream 497692 44332747 ~ 44335853 (-)
XLOC_026716 NA non-coding upstream 1704731 45539786 ~ 45543451 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000046_02027256_02031337 RMI2 coding CI01000046 null 2027154 ~ 2031451 (+)