XLOC_026741 (ndel1b)


Basic Information

Item Value
gene id XLOC_026741
gene name ndel1b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 48584684 ~ 48612078 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00052064
GGCATTTCTGTCAGCCACCGCTCGAGAGCAGGGGAGAAACTGAGCCTGTCCACCGAGCTCTGAAAAGGACATGAGAAGGTCTCCACCATGGACACAGAGATGATGCCAAAATTCTCCTCAAAAGACGAGGAAATCGATTACTGGAAGTGTTTGTCTCTCAAATACAAAAAGAGTTGTCATGATGCTCAGGAAGAGCTGCAGGAGTTTCAGGAAGGCAGTCGGGAGTTGGAGGCCGAGCTGGAGGCTCAGCTGGGTCAGGCAGAACACCGCATCCGAGACCTGCAGTCCGAGAACCAAAGGCTGAAGAGCGAGGTGGACATACTCAAGGAGAAACTAGAGCAGCAGTATGCACAGAGCTATAAGCAGATCTCCATGCTGGAGGACGACCTGCTCCAAACACGCGGCATCAAGGAACAACTGCACAAATACGTCAGAGAGCTGGAGCAGGCCAACGATGACCTGGAGAGAGCCAAGAGGGCCACCATCACGTCTCTGGAGGACTTTGAGCAGAGGCTGAACCAGGCGATTGAGAGGAACGCTTTCCTGGAAAGCGAACTGGACGAGAAGGAGTCTCTGCTGGTCTCAGTGCAGAGGCTTAAAGATGAAGCTAGAGACCTGAGGCAGGAGTTGGCTGTACGAGAGAGGACGTCAGATGTGACCAGGATGTCGGCCCCCAGTTCTCCTACTTTAGATATTGATAAGACAGACTCTGCTGTGCAGGCCTCGCTGTCTCTCCCAGCTACACCTGTGGGGAAGACCATGGAGCATCCTTTCATTGGCACAAAAGCATTAACCAATGGCTGTGGAAATGGCTCCCCTCTCACACCATCTGCACGGATCTCAGCTCTTAACATCGTTGGTGACCTTCTGCGGAAAGTCGGGGCTCTCGAGTCTAAACTAGCGGCCTGTAGAAATTTTGCCAAGGATCAGGCAGCAAGGAAAAACTACACCACAGGAAATGGAAACCTCATCAACAGCAATGCAACAAAGTTCTCTCATTCGCTTCACACAACATATTTTGATAAGACGACTATGAATGGACTGGATCCCGGAGCTCTGAGCGCCGCTATAGCCTCCCCGCGGGCCGTGTCTCCTCCAGGGCTGCTCCCTCTCAGCGTTTGACACACTTTCCCCAAGCGACCTCCATACAAACTCTGACACATCATGCAAATGGAGAGGACTCTAGAAGGAGTGTGTGTGCAAGTCTGATATGACGAGGCTTAAACGTGTCTGACAGATACATGTCGGGCATGAGCGTTAGTTCCTGTCGGCCTCTGTTCTCCTGAGGTCTCACTTAAAGCCAGCAAAACGACAAAGGTCTGAATCAGACCCACAGCTTCTGTGTGACTGTTTTTAGTGTGACACACAAGTGAATGAGAGAAATAAGGGGGGGAATGATTAAAAAGAATCAAAAGGGATTTGAGGTAAATTTCACTGTATGCTTATGTGCAAATATGAGCGCGGGTGCAAATGAGAGTTTTTGCGAGTGTGTGCAAGCACGCGAGcgagtgtgtgcgtgtatatgagCATGCACGCATATgcgagtttatgtgtgtgtaatcgTGTACGCTTGcgtgtgcatatttgtgtgtgtgtgtttgtgagcttgtgtttgtgtgaacgTGTGTGCATGCATAAGTATGTGCGTACTTGAGTTCTCGGGTGCATGCGTTCATGTGAGCGAACATTTGTATGTGCGTGCCTGCATGCTTTGCGTATGTGCTTGCATACATtactatgtgtgtgcgtgcaagctagtgtgtgtgtgcttgcgtatGTGCGAGCGTgcgtatgtgtgaatgtgtgcgcgAGCATGTGTCTGTGTGAACGTGTGTGCGAGCGTGcaattgtgtgtgtgcgcgcgtgcgtgagTGTGCATGCATTCGTACATGCTCGTGTTCTAAGGTGCAAGCGTTCATACGTGCGAATGTTCGTATGTGTGTGCCtgcgagtgtatgtgtgtgtgcacgcgtacATATGTGTGAGCTTGTGCgtatatgcgagtgtgtgtgcgtgcatttgtACAGGATTGGGGTTTAAAGGTGCATGCGTTTGTATGTGTGTACATTCATATGTGCGTGCCcacatgcatatgtgtgtgcgtgcatatgtTCGGATGTGCATGCGTGCATTCGTATGTGCATGCCTGCGTATACGTTTGTATGTGCGTGTCTATGTGTGTGGGGTCGTGTGTGTGTTAgtatgtgtatgcatgcatgcacacacttgtatgtgtgtgcatgcgagCATGTACGTGTTTGCAAGTGTATGCTTGTGTGCGTACGTATGTGCGagcgtgtatgtgtgtaaattggTATGTGCGTGCATTCATATGTGCGTCATTACatttgtatgtatgtgcgtgcTTGCGTTCGTATGTGCGTTTATAtgtacgtgcgtgcgtgcgttgcatgtgcgtgtgtgcatgcttgtgttCGTATGTGTGTGCGTTAGAATGTGCGTGCCTGCCTTCGTATGTGCATGCGACATTCGTATGTGTGcgcatgtatgtttgtatgtgcgTGCATATGTGTGCGTCTGTTGGAGCGCatgttcaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgcgcgatgTGTCCTTATGTGCgagcgtgtgtgcgcgcgcgcttgCGTTCATATGTGTAAGTGTGCATagatgcgtgtgtgtatgtgcgagCGTGCATTGGTgtgcatatgtgtgagtgtgcttgggtgtgtgtgtatgcgtgcataAATTGTTTGTGTTTGGGGCCTTGACTTGTTCACTTTTCAGGTTCAGTAAAGGGTCTTAATGTGGAGGTCAGCAGATATTTTGACTGAACAAATTGCCAAGAACATGTTTTGCATAGCATGGAAACATCCGCTACCTTTAATATCACTTATGAATTCTCAGTTCTAGCAGAGCTGGATGCACACCAGTCTCCatcttacacttttttttttttcttattttgggGGGAGGAAGGTATGCAGAAGGTTTGCATGTTATTTTTCCGACATTTAATTTCTGTATGTAGCACTTTGTACTTCAAAAATGCAAAGTGTTCACCGACTGTAGATTGAGCGGTGGCATCAAACCATATCGACACAAACTGCAAATGCTGTTTTACTCTTGTACCTGCTTCAACTGTAAATCCGTCTCTGTGCAATGTGAGCAGTATTCTGTGCTCGTATGAACCTCATCTCTATCCCACGTGCCTCTGGATCTGCTCTTGAGTTTGAGattcactgtttatttatttattattggaaCAGAAGCCAACTTATGTGTATCACAGTGTTTGAGTTCAGTTCGTTTACGCCAATTGTCTAGTATGGGAGCACTTGTTCGTGTTAAGTTTCCCCCTTTGAGTCTTCTATTTCAGTTTTCATGCACTTTGTTGGCTATTTTGTTATAACTCATGTATATAGATTTATAAACACAGCAGTCTGTAGATGCTCAACTGGGCTGATGTGctgtttaatttatttctgaAGCTTTATGGCATGTTTTGACACAAGGAGTGAATTTTACATACCGTGCAttggtttaaaaataatatatcaaGATGTACAATTGTCtaatgtgcaaataaataaagGGAAAGAA
>TCONS_00052065
ACCATGGACACAGAGATGATGCCAAAATTCTCCTCAAAAGACGAGGAAATCGATTACTGGAAGTGTTTGTCTCTCAAATACAAAAAGAGTTGTCATGATGCTCAGGAAGAGCTGCAGGAGTTTCAGGAAGGCAGTCGGGAGTTGGAGGCCGAGCTGGAGGCTCAGCTGGGTCAGGCAGAACACCGCATCCGAGACCTGCAGTCCGAGAACCAAAGGCTGAAGAGCGAGGTGGACATACTCAAGGAGAAACTAGAGCAGCAGTATGCACAGAGCTATAAGCAGATCTCCATGCTGGAGGACGACCTGCTCCAAACACGCGGCATCAAGGAACAACTGCACAAATACGTCAGAGAGCTGGAGCAGGCCAACGATGACCTGGAGAGAGCCAAGAGGGCCACCATCACGTCTCTGGAGGACTTTGAGCAGAGGCTGAACCAGGCGATTGAGAGGAACGCTTTCCTGGAAAGCGAACTGGACGAGAAGGAGTCTCTGCTGGTCTCAGTGCAGAGGCTTAAAGATGAAGCTAGAGACCTGAGGCAGGAGTTGGCTGTACGAGAGAGGACGTCAGATGTGACCAGGATGTCGGCCCCCAGTTCTCCTACTTTAGATATTGATAAGACAGACTCTGCTGTGCAGGCCTCGCTGTCTCTCCCAGCTACACCTGTGGGGAAGACCATGGAGCATCCTTTCATTGGCACAAAAGCATTAACCAATGGCTGTGGAAATGGCTCCCCTCTCACACCATCTGCACGGATCTCAGCTCTTAACATCGTTGGTGACCTTCTGCGGAAAGTCGGGGCTCTCGAGTCTAAACTAGCGGCCTGTAGAAATTTTGCCAAGGATCAGGCAGCAAGGAAAAACTACACCACAGGAAATGGAAACCTCATCAACAGCAATGCAACAAAGTTCTCTCATTCGCTTCACACAACATATTTTGATAAGACGACTATGAATGGACTGGATCCCGGAGCTCTGAGCGCCGCTATAGCCTCCCCGCGGGCCGTGTCTCCTCCAGGGCTGCTCCCTCTCAGCGTTTGACAC

Function

symbol description
ndel1b Predicted to enable microtubule binding activity. Predicted to be involved in several processes, including centrosome localization; microtubule cytoskeleton organization; and vesicle transport along microtubule. Predicted to act upstream of or within nervous system development and neurofilament cytoskeleton organization. Predicted to be located in cytoplasm; microtubule; and spindle. Predicted to be part of kinesin complex. Predicted to be active in centrosome and kinetochore. Is expressed in brain; hindbrain neural plate; notochord; somite; and trunk. Orthologous to human NDEL1 (nudE neurodevelopment protein 1 like 1).

GO:

id name namespace
GO:0016477 cell migration biological_process
GO:0010975 regulation of neuron projection development biological_process
GO:0000132 establishment of mitotic spindle orientation biological_process
GO:0007020 microtubule nucleation biological_process
GO:0007059 chromosome segregation biological_process
GO:0047496 vesicle transport along microtubule biological_process
GO:2000574 regulation of microtubule motor activity biological_process
GO:0051303 establishment of chromosome localization biological_process
GO:0007100 mitotic centrosome separation biological_process
GO:0007399 nervous system development biological_process
GO:0051642 centrosome localization biological_process
GO:0060052 neurofilament cytoskeleton organization biological_process
GO:0000776 kinetochore cellular_component
GO:0005813 centrosome cellular_component
GO:0005819 spindle cellular_component
GO:0005856 cytoskeleton cellular_component
GO:0005871 kinesin complex cellular_component
GO:0005874 microtubule cellular_component
GO:0005737 cytoplasm cellular_component
GO:0008017 microtubule binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-5889 Predicted to enable microtubule binding activity. Predicted to be involved in several processes, including centrosome localization; microtubule cytoskeleton organization; and vesicle transport along microtubule. Predicted to act upstream of or within nervous system development and neurofilament cytoskeleton organization. Predicted to be located in cytoplasm; microtubule; and spindle. Predicted to be part of kinesin complex. Predicted to be active in centrosome and kinetochore. Is expressed in brain; hindbrain neural plate; notochord; somite; and trunk. Orthologous to human NDEL1 (nudE neurodevelopment protein 1 like 1).

Ensembl:

ensembl_id ENSDARG00000104225

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00052064 False 3596 mRNA 0.47 9 48584684 48612078
TCONS_00052065 True 1041 mRNA 0.52 8 48587155 48603471

Neighbor

gene id symbol gene type direction distance location
XLOC_026740 atp5pd coding downstream 24778 48549294 ~ 48559906 (-)
XLOC_026739 NA coding downstream 110930 48461497 ~ 48473754 (-)
XLOC_026738 NA coding downstream 256551 48323540 ~ 48328133 (-)
XLOC_026737 znf750 coding downstream 325395 48253202 ~ 48259289 (-)
XLOC_026735 adgrl1a coding downstream 708257 47498433 ~ 47876427 (-)
XLOC_026742 ARHGAP44 coding upstream 26516 48638594 ~ 48716422 (-)
XLOC_026743 BX769173.3 coding upstream 353845 48965923 ~ 48980319 (-)
XLOC_026744 BX769173.1 coding upstream 374593 48986671 ~ 48993580 (-)
XLOC_026745 NA coding upstream 387825 48999903 ~ 49001293 (-)
XLOC_026746 BX769173.2 coding upstream 398909 49010987 ~ 49015203 (-)
XLOC_026736 NA non-coding downstream 751570 47827202 ~ 47833114 (-)
XLOC_026732 NA non-coding downstream 1387724 47194738 ~ 47196960 (-)
XLOC_026731 NA non-coding downstream 1453573 47130032 ~ 47131111 (-)
XLOC_026747 NA non-coding upstream 411822 49023900 ~ 49036782 (-)
XLOC_026748 BX784040.1 non-coding upstream 465684 49077762 ~ 49077879 (-)
XLOC_026752 NA non-coding upstream 574320 49186398 ~ 49372676 (-)
XLOC_026754 NA non-coding upstream 794080 49406158 ~ 49418345 (-)

Expression


Co-expression Network