Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00052065 |
| length | 1041 |
| RNA type | mRNA |
| GC content | 0.52 |
| exon number | 8 |
| gene id | XLOC_026741 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007114.7 |
| NCBI id | CM002887.2 |
| chromosome length | 62628489 |
| location | 48584684 ~ 48612078 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0016477 | cell migration | biological_process |
| GO:0010975 | regulation of neuron projection development | biological_process |
| GO:0000132 | establishment of mitotic spindle orientation | biological_process |
| GO:0007020 | microtubule nucleation | biological_process |
| GO:0007059 | chromosome segregation | biological_process |
| GO:0047496 | vesicle transport along microtubule | biological_process |
| GO:2000574 | regulation of microtubule motor activity | biological_process |
| GO:0051303 | establishment of chromosome localization | biological_process |
| GO:0007100 | mitotic centrosome separation | biological_process |
| GO:0007399 | nervous system development | biological_process |
| GO:0051642 | centrosome localization | biological_process |
| GO:0060052 | neurofilament cytoskeleton organization | biological_process |
| GO:0000776 | kinetochore | cellular_component |
| GO:0005813 | centrosome | cellular_component |
| GO:0005819 | spindle | cellular_component |
| GO:0005856 | cytoskeleton | cellular_component |
| GO:0005871 | kinesin complex | cellular_component |
| GO:0005874 | microtubule | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0008017 | microtubule binding | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-030131-5889 | Predicted to enable microtubule binding activity. Predicted to be involved in several processes, including centrosome localization; microtubule cytoskeleton organization; and vesicle transport along microtubule. Predicted to act upstream of or within nervous system development and neurofilament cytoskeleton organization. Predicted to be located in cytoplasm; microtubule; and spindle. Predicted to be part of kinesin complex. Predicted to be active in centrosome and kinetochore. Is expressed in brain; hindbrain neural plate; notochord; somite; and trunk. Orthologous to human NDEL1 (nudE neurodevelopment protein 1 like 1). |
| ensembl_id | ENSDART00000189027 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00053119 | lncRNA | downstream | 113401 | 48461497 ~ 48473754 (-) | False | XLOC_026739 |
| TCONS_00052494 | lncRNA | downstream | 118030 | 48461497 ~ 48469125 (-) | False | XLOC_026739 |
| TCONS_00053118 | lncRNA | downstream | 118034 | 48461497 ~ 48469121 (-) | False | XLOC_026739 |
| TCONS_00053117 | lncRNA | downstream | 118040 | 48461497 ~ 48469115 (-) | False | XLOC_026739 |
| TCONS_00052493 | lncRNA | downstream | 118041 | 48461497 ~ 48469114 (-) | False | XLOC_026739 |
| TCONS_00052499 | lncRNA | upstream | 396432 | 48999903 ~ 49001293 (-) | False | XLOC_026745 |
| TCONS_00052498 | lncRNA | upstream | 396432 | 48999903 ~ 49001293 (-) | True | XLOC_026745 |
| TCONS_00053120 | lncRNA | upstream | 420429 | 49023900 ~ 49036782 (-) | True | XLOC_026747 |
| TCONS_00053121 | lncRNA | upstream | 582927 | 49186398 ~ 49188566 (-) | False | XLOC_026752 |
| TCONS_00053122 | lncRNA | upstream | 582927 | 49186398 ~ 49372676 (-) | False | XLOC_026752 |
| TCONS_00052063 | mRNA | downstream | 27249 | 48549294 ~ 48559906 (-) | True | XLOC_026740 |
| TCONS_00052060 | mRNA | downstream | 327866 | 48253202 ~ 48259289 (-) | True | XLOC_026737 |
| TCONS_00052059 | mRNA | downstream | 710728 | 47498433 ~ 47876427 (-) | False | XLOC_026735 |
| TCONS_00052058 | mRNA | downstream | 710728 | 47498433 ~ 47876427 (-) | True | XLOC_026735 |
| TCONS_00052057 | mRNA | downstream | 1292790 | 47281236 ~ 47294365 (-) | True | XLOC_026734 |
| TCONS_00052066 | mRNA | upstream | 35123 | 48638594 ~ 48716422 (-) | True | XLOC_026742 |
| TCONS_00052067 | mRNA | upstream | 362452 | 48965923 ~ 48980319 (-) | True | XLOC_026743 |
| TCONS_00052068 | mRNA | upstream | 383200 | 48986671 ~ 48993580 (-) | True | XLOC_026744 |
| TCONS_00052069 | mRNA | upstream | 407516 | 49010987 ~ 49015203 (-) | True | XLOC_026746 |
| TCONS_00052071 | mRNA | upstream | 499739 | 49103210 ~ 49110710 (-) | True | XLOC_026749 |
| TCONS_00052055 | other | downstream | 1391921 | 47195137 ~ 47195234 (-) | True | XLOC_026732 |
| TCONS_00052007 | other | downstream | 4492929 | 44081623 ~ 44094226 (-) | False | XLOC_026707 |
| TCONS_00051981 | other | downstream | 5720955 | 42866083 ~ 42866200 (-) | True | XLOC_026691 |
| TCONS_00051964 | other | downstream | 7275012 | 41312022 ~ 41312143 (-) | True | XLOC_026680 |
| TCONS_00051939 | other | downstream | 8057376 | 40526882 ~ 40529779 (-) | False | XLOC_026667 |
| TCONS_00052070 | other | upstream | 474291 | 49077762 ~ 49077879 (-) | True | XLOC_026748 |
| TCONS_00052082 | other | upstream | 1211726 | 49815197 ~ 49815287 (-) | False | XLOC_026760 |
| TCONS_00052087 | other | upstream | 1500600 | 50104071 ~ 50117962 (-) | True | XLOC_026764 |
| TCONS_00052109 | other | upstream | 2944662 | 51548133 ~ 51548250 (-) | True | XLOC_026779 |
| TCONS_00052111 | other | upstream | 3304015 | 51907486 ~ 51907562 (-) | True | XLOC_026783 |
