RNA id: TCONS_00052066


Basic Information

Item Value
RNA id TCONS_00052066
length 2877
RNA type mRNA
GC content 0.55
exon number 20
gene id XLOC_026742
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 48638594 ~ 48716422 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATTCCTCCTCTTGCTAGAACtgcttataaatgtgtttttctcCAATTTAACAGGGCAGAAAAAACTGAGGTACTTAGTGAAGACCTGCTACAGGTGGAGAAGCGTTTGGACCTGGTGAAACAGGTCTCTCATAGCACACATAAGAAGCTCACAGCATGTCTACAGGGTCAACAAGGCACAGAAATAGAAAAGAGATCTGTCAAATCACCTTCGAAAAAGCTTCCACTGACTACACTTGCTCAATGTATGGTGGAGGGAGCTGCTGTTTTAGGAGACGACTCTCTACTTGGCAAGATGCTGAAGCTCTGTGGAGATACAGAGGAGAAGTTGGCCCAAGAGCTGCTCGTCTTTGAGCTTCAGATTGAAAGAGATGTCGTGGAGCCTCTTTATGTGCTGGCTGAGGTGGAAATTCCGAACATTCAGAAACAGCGAAAACATTTAGCCAAACTTGTTCTAGACATGGATTCTGCAAGGACACGGTGGCAACAATCATCCAAGTCTTCAGGTCACCCTAGTAACGTGCAGCAGGGTGGAGCCAAGTCTGATTCCCTGAGGGAGGAAATGGAGGAGACGGCCAATCGGATGGAGATCTGCAGGGACCAGTTATCAGCGGACATGTACAACTTTGTGGCCAAAGAAATAGACTATGCAAACTACTTTCAAACGCTCATTGAGGTTCAGGCCGAGTACCACAGGAAGTCTCTGGAGATCCTGCAGAGTGTCCTGCCGCAGATCAAAGCTCACCAGGAGGCCTGGATAGAGAAGCCATCGTATGGGAAGGCCTTAGAGGAACATCTAGCCATCAGCGGCAGGGAGATTGCCTTTCCTATCGAGGCTTGCGTCACCATGCTGCTCGAATGTGGCATGCAGGAAGAGGGTTTATTTCGAGTGGCTCCCTCTGCCTCCAAACTGAAGAAGCTGAAAGCGTCGCTGGACTGTGGCGTTATGGATGTGCAAGAATACTCAGCCGACCCGCACGCCATCGCCGGGGCGTTAAAGTCTTATCTCCGTGAGCTTCCTGAACCTCTAATGACATTTGAGCTCTATGATGAATGGATTCAAGCCTCAAATATTCAGGATATGGACAAAAGGCTTCAAGCCCTGTTGTGTACATGTGAGAAACTACCAGCAGACAATCTGAACAACTTCAGATATTTAATCAAATTCTTATCCAAACTCACAGAGTACCAAGACTCTAATAAAATGACACCAGGCAACATTGCAATAGTTCTCGGACCCAACCTGCTGTGGACACATTCAGAAGGGAACATGACAGAAATGATGACCACCATGTCCCTGCAAATCGTAGGAATCATTGAGCCGATCATCCAGCACGCGGACTGGTTCTTCCCTGGAGAAATTGAGTTCAACCTGACAGGCAGCTACGGCAGCCCAGTGCACACCAACCACAACTCCAACTACAGCTCCATGCCCTCACCAGATATGGACCAATCAGAGCGCAAGCAGCAGCACGACCAGAGCCGACGCCCACTCAGCGTTGCCACCGACAACATGATGCTGGAGTTCTACAAGAAGGACGGTTTGTGTTTTCATGTGGACAGTGTGGGTGTCAGAGTCATGGACACCTCATGGGTGAAAGGCAAAAGCACCTCTACACTTTCCCGTAAATCCTCATCCACACCTCCCAGTGGTCAACCacctggatcaccagcagacacACTGATCTCAGAGCAGGCTGGTGAGCTGGCAACATCTCCAATCCCGACCCCCCCTCCTGGAGACAGGGGCAGCTCAGACGACGTGTCGCCCAATCGGCCGGATTCCTCACATGTCTATGTGTCCCACGTGGAGGAGCGGCCACCCCCTCCGTACCCTTCCTCGTCCTCCCATCCCGGCCCTCACCATTTCTACCCCAAGCCCCCTCCCTGCGCTCGTCCTGTGGCCCCTGGCCCAGAGTCCCAGCCACCTGCCTCTCCGCCTCCACCCCTGCGGTGGTCTGGCTTTCACCAGCCTCAGCCCCAGCTACCACccccttcctcctcctcctcctcctcctcttgctCACTCGATATCAACTCCAACCCCAAGCCTAGCTGCCTGCACTTTCCCAAACACGGCCCTGTGTGTGACGCACCGCATGCCTCTATGCTCCATGACGTCAATTCTTCGCCCCTCTACATTAAAACCCCTCTCGTGCTGACCCGCCACGACCCCCCTAGCCTCCCCTCTTCCGCTCCCCCGCCGTGGGCTGCCTGTCCATGTGCCCGTGAGAGAGGACCCCCCAGGCTGACTAGtaCTCTGAAGAGTAAGGAACTCTCTCCTGTGATTGGCCACAAGGCTGTGCAGGCGTCAGGATCAACAGTGCCCCCTGTCGGCGGCCAGCAGAGCAACAGCCAGTCTCCACACTCGGCCGAGCACAGCCCACACACCTTACGCAAAGTGTCTAAGAAATTGGCCCCTGTGCCGCCCAAGGTTCCCTACGGCCAGTCGGGGGGGATGTCAGACCAATCCACAGGTCAGCCGTCTCCGGTTAGCCTGTCCCCCACTCCCCCAAGTACCCCCTCCCCTTACGGTTTGGGCTGTCCCCCTGGACATGCGCCCACCTCTTCCCCTGGCCAGACCCCATTAGGGGGACCCCATACACTGTCCTCACCACCAACTTCTCTGACTGGTACGCTCACAAAGTCCCGGCCCAACCCAAAGCCCAGGCAGAGACCCAGTCTGCCCCCTCCCCAGCCGCCCACCGTGCCCCCTACGGTCCCCCAGCCCCTGGAGCAGGGTCTACTTGACGGATTATCCCCCGGAGAGAGCATGTCCACAGGTAAACATGCCTCAGTGGCACCATCACGATTGGGAGTCCAGCGTCCCTCTCTCAAACTGTCTGTCTCTCCGTCCTACGCAGGCGATGGACTTTAA

Function

GO:

id name namespace
GO:0035020 regulation of Rac protein signal transduction biological_process
GO:0035021 negative regulation of Rac protein signal transduction biological_process
GO:0098886 modification of dendritic spine biological_process
GO:0098887 neurotransmitter receptor transport, endosome to postsynaptic membrane biological_process
GO:0032956 regulation of actin cytoskeleton organization biological_process
GO:0061001 regulation of dendritic spine morphogenesis biological_process
GO:0007165 signal transduction biological_process
GO:0031256 leading edge membrane cellular_component
GO:0048786 presynaptic active zone cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0014069 postsynaptic density cellular_component
GO:0043197 dendritic spine cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005096 GTPase activator activity molecular_function

KEGG:

id description
ko04131 Membrane trafficking

ZFIN:

id description
ZDB-GENE-120206-2 Predicted to enable GTPase activator activity. Predicted to be involved in several processes, including modification of dendritic spine; negative regulation of Rac protein signal transduction; and neurotransmitter receptor transport, endosome to postsynaptic membrane. Predicted to act upstream of or within signal transduction. Predicted to be located in cytoplasm. Predicted to be active in several cellular components, including dendritic spine; leading edge membrane; and postsynaptic density. Orthologous to human ARHGAP44 (Rho GTPase activating protein 44).

Ensembl:

ensembl_id ENSDART00000164979

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00053119 lncRNA downstream 164840 48461497 ~ 48473754 (-) False XLOC_026739
TCONS_00052494 lncRNA downstream 169469 48461497 ~ 48469125 (-) False XLOC_026739
TCONS_00053118 lncRNA downstream 169473 48461497 ~ 48469121 (-) False XLOC_026739
TCONS_00053117 lncRNA downstream 169479 48461497 ~ 48469115 (-) False XLOC_026739
TCONS_00052493 lncRNA downstream 169480 48461497 ~ 48469114 (-) False XLOC_026739
TCONS_00052499 lncRNA upstream 283481 48999903 ~ 49001293 (-) False XLOC_026745
TCONS_00052498 lncRNA upstream 283481 48999903 ~ 49001293 (-) True XLOC_026745
TCONS_00053120 lncRNA upstream 307478 49023900 ~ 49036782 (-) True XLOC_026747
TCONS_00053121 lncRNA upstream 469976 49186398 ~ 49188566 (-) False XLOC_026752
TCONS_00053122 lncRNA upstream 469976 49186398 ~ 49372676 (-) False XLOC_026752
TCONS_00052064 mRNA downstream 26516 48584684 ~ 48612078 (-) False XLOC_026741
TCONS_00052065 mRNA downstream 35123 48587155 ~ 48603471 (-) True XLOC_026741
TCONS_00052063 mRNA downstream 78688 48549294 ~ 48559906 (-) True XLOC_026740
TCONS_00052060 mRNA downstream 379305 48253202 ~ 48259289 (-) True XLOC_026737
TCONS_00052059 mRNA downstream 762167 47498433 ~ 47876427 (-) False XLOC_026735
TCONS_00052067 mRNA upstream 249501 48965923 ~ 48980319 (-) True XLOC_026743
TCONS_00052068 mRNA upstream 270249 48986671 ~ 48993580 (-) True XLOC_026744
TCONS_00052069 mRNA upstream 294565 49010987 ~ 49015203 (-) True XLOC_026746
TCONS_00052071 mRNA upstream 386788 49103210 ~ 49110710 (-) True XLOC_026749
TCONS_00052072 mRNA upstream 409681 49126103 ~ 49138004 (-) True XLOC_026750
TCONS_00052055 other downstream 1443360 47195137 ~ 47195234 (-) True XLOC_026732
TCONS_00052007 other downstream 4544368 44081623 ~ 44094226 (-) False XLOC_026707
TCONS_00051981 other downstream 5772394 42866083 ~ 42866200 (-) True XLOC_026691
TCONS_00051964 other downstream 7326451 41312022 ~ 41312143 (-) True XLOC_026680
TCONS_00051939 other downstream 8108815 40526882 ~ 40529779 (-) False XLOC_026667
TCONS_00052070 other upstream 361340 49077762 ~ 49077879 (-) True XLOC_026748
TCONS_00052082 other upstream 1098775 49815197 ~ 49815287 (-) False XLOC_026760
TCONS_00052087 other upstream 1387649 50104071 ~ 50117962 (-) True XLOC_026764
TCONS_00052109 other upstream 2831711 51548133 ~ 51548250 (-) True XLOC_026779
TCONS_00052111 other upstream 3191064 51907486 ~ 51907562 (-) True XLOC_026783

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000033_01119076_01152170.mRNA False 2665 mRNA 0.52 19 CI01000033 1118929 ~ 1152170 (-)
bowfin (Amia calva) AMCG00013296 True 2832 mRNA 0.59 19 CM030125.1 27548805 ~ 27569295 (+)