RNA id: TCONS_00052072


Basic Information

Item Value
RNA id TCONS_00052072
length 1348
RNA type mRNA
GC content 0.50
exon number 7
gene id XLOC_026750
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 49126103 ~ 49138004 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAGCAGCGGGCGCGCGTGTGTTTGAGCTGCGCTGCTGTTCAGTGTGTCAATAGAGGAAGAAGTGTGTGTTCTGTTGAGTGATGTGATGTCCGCCCTCCTCGCACACACTACAACACTCCCTAAACTCCTGCATTAACACTCCTCAACAATCATCCCCTGTAATGAACTTACTATAAGCTCGGCGTCCAGCGGTTCATGGTTTTCTCCTTGCCAGTGTTAGTTTGATCTGGAGATTTGAATGGGTTGAATTGCAGAGATTTCTCCTTCGATTTGGGAACATAAAGAACGGTATTAAAGCTTGTGCACACACCTTTTGCATTAAAGACAGCAGTGCCCAAAAATGCCACTTGGATTGGGACGCAGAAAGAAGGCGTCTCCGCTGGTGGAGAACGAGGAGGCTGAACCCATCCGGGCTGGACTGAACGTCTCAGGGTTGGATGGTCTGGATGGTGGCAGGGTTGGCTTGGGTGAAGGAGCTGCCCATGAGGGTTTACCACCTCCACCCACCAGTCTGCGCCCACGACTGATCTTCCACACACAGCTGGCTCACGGCAGCCCCACAGGACGTATCGAGGGCTTCAGTAACGTGCGTGAGCTTTATGCTAAGATAGGAGAGGCCTTTGGGATTCCTCCAACAGAGGTGATGTTTTGCACACTGAACACTCACAAAGTGGATATGGACAAGCTTTTGGGTGGCCAGATCGGACTGGAGGACTTTATATTCGCTCATGTGAAGGGCCAAAGGAAAGAGGTGGAGGTCTTTAAAGGAGAGGATGCACTGGGGCTCACCATCACTGATAATGGAGCTGGCTATGCTTTTATTAAGAGAATAAGAGAAGGCAGTATTATTCACCAGATCCAAGTTATCAATGTGGGCGACATGATTGAGTCAATCAACGGGCAAATACTCATTGGCTGTCGCCATTATGAGGTCGCCAAAATGCTGAAGGAGCTGCCTAAAGGGAAAACTTTTTTCCTGAAGATGGTGGAACCCTTAAAGGCATTTGaCATGATCAGTCAGCGTTCAGGAAGCAGGTCTGGCTCTGCACAGTTAGGAACGGGCAGAGGAACTTTGCGTCTGAGGTCTAAAGGACCGGCCACTGTAGAGGAGCTGCCTTCAGCTTTTGAAGAAAAAGCCATTGAGAAAGTTGATGATCTCCTGGAGAGCTACATGGGCATCAGAGACAGTGAACTTGCTGCGACAATGGTGGAGCTTGGCAAGGATAAAAAGAACCCAGATGAGTTTGCTGAAGCTTTGGACGAGACTCTGGGCGATTTTGCTTTTCCAGATGAGTTTGTGTTTGATGTGTGGGGTGCCATAGGCGACGCAAAGGTCGGTCGCGTGTAA

Function

GO:

id name namespace
GO:0001525 angiogenesis biological_process
GO:0048844 artery morphogenesis biological_process
GO:0001946 lymphangiogenesis biological_process
GO:0004707 MAP kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060726-1 Enables MAP kinase activity. Acts upstream of or within with a positive effect on sprouting angiogenesis. Acts upstream of or within angiogenesis; artery morphogenesis; and lymphangiogenesis. Is expressed in dorsal aorta; neural tube; posterior cardinal vein; and somite. Orthologous to human GIPC1 (GIPC PDZ domain containing family member 1).

Ensembl:

ensembl_id ENSDART00000167173

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00053120 lncRNA downstream 89321 49023900 ~ 49036782 (-) True XLOC_026747
TCONS_00052499 lncRNA downstream 124810 48999903 ~ 49001293 (-) False XLOC_026745
TCONS_00052498 lncRNA downstream 124810 48999903 ~ 49001293 (-) True XLOC_026745
TCONS_00052496 lncRNA downstream 657022 48464836 ~ 48469081 (-) False XLOC_026739
TCONS_00053121 lncRNA upstream 48394 49186398 ~ 49188566 (-) False XLOC_026752
TCONS_00053122 lncRNA upstream 48394 49186398 ~ 49372676 (-) False XLOC_026752
TCONS_00053123 lncRNA upstream 68132 49206136 ~ 49372185 (-) True XLOC_026752
TCONS_00053124 lncRNA upstream 268154 49406158 ~ 49418345 (-) True XLOC_026754
TCONS_00052500 lncRNA upstream 628962 49766966 ~ 49790030 (-) False XLOC_026760
TCONS_00052071 mRNA downstream 15393 49103210 ~ 49110710 (-) True XLOC_026749
TCONS_00052069 mRNA downstream 110900 49010987 ~ 49015203 (-) True XLOC_026746
TCONS_00052068 mRNA downstream 132523 48986671 ~ 48993580 (-) True XLOC_026744
TCONS_00052067 mRNA downstream 145784 48965923 ~ 48980319 (-) True XLOC_026743
TCONS_00052066 mRNA downstream 409681 48638594 ~ 48716422 (-) True XLOC_026742
TCONS_00052073 mRNA upstream 12818 49150822 ~ 49163683 (-) True XLOC_026751
TCONS_00052074 mRNA upstream 241770 49379774 ~ 49382896 (-) True XLOC_026753
TCONS_00052075 mRNA upstream 287789 49425793 ~ 49447949 (-) True XLOC_026755
TCONS_00052076 mRNA upstream 321824 49459828 ~ 49504023 (-) True XLOC_026756
TCONS_00052077 mRNA upstream 366915 49504919 ~ 49514874 (-) True XLOC_026757
TCONS_00052070 other downstream 48224 49077762 ~ 49077879 (-) True XLOC_026748
TCONS_00052055 other downstream 1930869 47195137 ~ 47195234 (-) True XLOC_026732
TCONS_00052007 other downstream 5031877 44081623 ~ 44094226 (-) False XLOC_026707
TCONS_00051981 other downstream 6259903 42866083 ~ 42866200 (-) True XLOC_026691
TCONS_00051964 other downstream 7813960 41312022 ~ 41312143 (-) True XLOC_026680
TCONS_00052082 other upstream 677193 49815197 ~ 49815287 (-) False XLOC_026760
TCONS_00052087 other upstream 966067 50104071 ~ 50117962 (-) True XLOC_026764
TCONS_00052109 other upstream 2410129 51548133 ~ 51548250 (-) True XLOC_026779
TCONS_00052111 other upstream 2769482 51907486 ~ 51907562 (-) True XLOC_026783
TCONS_00052136 other upstream 4551306 53689310 ~ 53689428 (-) True XLOC_026804

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000033_01255331_01259169.mRNA True 1445 mRNA 0.49 7 CI01000033 1254970 ~ 1259179 (-)