XLOC_027332 (sema3c)


Basic Information

Item Value
gene id XLOC_027332
gene name sema3c
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 22613625 ~ 22652944 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00053775
AACTGCAGAAAACCCAGTCCTTTGAGCACTACTCTCTATCTGAGAAGGCCATGGACTACAGAATCCTTTTCACGGATGAGGATCAAGATCGCATGTACGTGGGCTGCAAAGACCACATACTCTCGATGGACATCAACAACATCAGCCAGGCCACACTGAAGATCTTCTGGCCGGCGTCCATCAGTAAGGTCGAGGAGTGTCAGATGGCTGGCAAAGACCCGACACATGGATGTGGGAATTTCTTAAGAGTGATCCAGCCTTATAACAGGACTCATCTGTTCATCTGCGGCAGTGGAGCCTACAGCCCAGTGTGTGCATATGTTAACCGTGGCAGACGTCCTGAGGAGCAAGTGTTCCAGATCTCTTCGCGAGCAGAATCAGGGAAAGGGCGCTGCTCCTTCAACCCACAAGTCAACACTGTCTCGGTCATGCTCAATCAGGAGTTGTTTTCTGGCATGTACATTGACTTCATGGGGACAGACGCGGCTATCTTCAGAAGCCTGACCACAAGAAACCCTGTGCGGACGGACCAACATAACTCCAAATGGCTGAGCGAGCCACTGTTCATTGACGCCCAATTGATCCCTGATGGATCAGACCCCAACGATGCTAAACTGTACTTTTTCCTGCGGGAGCGACTCACAGACACCAGTGGAAACACGAAAAACATTCATGCCATGGTGGCTCGAGTGTGCCCTAATGACACTGGTGGTCAACGTAGTCTGGTGAACAAGTGGACCACATTTCTTAAGGCTCGAATGGTGTGTTCAGTTCTAGAGGAGGACGGGACTGAGACACACTTTGATGAGCTTGaaaatgtgtttttattggaGACGGACCACCCAAAGGGCCTCCTCATCTTTGGAGTCTTCACCTCCACAAGCTCTGTGTTCAGAGGCTCTGCtgtctgtgtgtacaacatgGCCGACATCCTGACAGTCTTCAACGGGCCGTTTGCACACAGGGAAGGGCCCAACTTCCAGTGGGTGGCTTTCCAGGGCCGCATCCCATACCCACGACCGGGAACTTGTCCCGGTGGTGCGTTCACCCCTCACATCCAGAGCACTAAAGAGTTTCCAGATGATGTGGTGACGTTTGTGAGGAATCACCCTGTCATGTTTAACCCCATCTACCCTGTGGGAAGGAAACCCCTGGTGGTGCGAACGCATGCCGACTACAAATACACCTCTATAGCGGTGGATCAGGTCCCAGCAGCAGACGGCCACTACCAGGTCCTGTTCCTGGGCACAGATAAAGGCACGGTGCAGAAGGTCGTGGTTTTGCCGTCAAACGGCTCACTGGATGAGGATCTAATCCTGGAGGAGCTGGAAGTGTTTAAGACACAGTCTCCCATTACCAACCTAAGAATCTCCTCTAAAAAGCAACAGCTGTATGTTAGCTCTGAGCATGGGATCTCCCAGGTGTCTTTACACCGCTGCAATGCATACGGCTCTGCCTGTGCGGACTGCTGTTTAGCACGGGACCCTTACTGCGCCTGGGATGGTCTCAGCTGTTCCCGATTCTATCCCACTGGCAAAAgGAGAAGCAGAAGGCAGGATATTATGCATGGAAATCCACTGACTCAGTGCAGAGGGTTCAATCTGAAAGCCTACAGGAACGCAGTGGAGATGACTCAGTATGGAGTCAAAAACAACACCACCTTCCTGGAGTGTCAGCCGAAATCTCCCCAGGCCTCGGTTAAATGGCTCATTCAGAGAGACAACGATCGCAGGAAAGAGGTGAAGCTGAGTGATCGTGTAGTGTCCACCAATCACGGTTTGCTCATCCGCTCCGTTCATTCCTCAGACCAGGGTCTCTACTACTGTCTGGCCACAGAGAACGGCTTCAAGCGCACACTGGCAAAGATCCGTCTACAGGTGCTGAGCGAGGCTCTAGTCAGCGCCCTCAGCAATAAACAACAGTCTCCCTGGGGCTGGACAGCCAATCTGCACCCCAAAGCCCTGGTGTCGGCCTTCAGTCCAGCTGAGACGCTCGCCATGCATCAATACTGCAAAGAACGCAAGCAGATGCAGAGTTTGCAGAGCATACAGAGCCCCATGAGAGGAGATCTGGGAAAACTCAAACCCCTGCTGGACCACAGGAAGAGCAGGAACCGCCGAAATCACTTACAGCAGGACTAA

Function

symbol description
sema3c Enables neuropilin binding activity. Acts upstream of or within enteric nervous system development. Predicted to be active in extracellular space. Predicted to be integral component of plasma membrane. Is expressed in caudal tuberculum and otic vesicle. Orthologous to human SEMA3C (semaphorin 3C).

GO:

id name namespace
GO:0048484 enteric nervous system development biological_process
GO:0001755 neural crest cell migration biological_process
GO:0050919 negative chemotaxis biological_process
GO:0048843 negative regulation of axon extension involved in axon guidance biological_process
GO:0007411 axon guidance biological_process
GO:0030335 positive regulation of cell migration biological_process
GO:0071526 semaphorin-plexin signaling pathway biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0005615 extracellular space cellular_component
GO:0045499 chemorepellent activity molecular_function
GO:0030215 semaphorin receptor binding molecular_function
GO:0038191 neuropilin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050513-5 Enables neuropilin binding activity. Acts upstream of or within enteric nervous system development. Predicted to be active in extracellular space. Predicted to be integral component of plasma membrane. Is expressed in caudal tuberculum and otic vesicle. Orthologous to human SEMA3C (semaphorin 3C).

Ensembl:

ensembl_id ENSDARG00000034300

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00053775 True 2141 mRNA 0.52 16 22613625 22652944

Neighbor

gene id symbol gene type direction distance location
XLOC_027331 BX537168.1 coding upstream 50060 22547576 ~ 22563565 (+)
XLOC_027330 ndufb2 coding upstream 130494 22480169 ~ 22483131 (+)
XLOC_027329 NA coding upstream 186988 22424450 ~ 22426637 (+)
XLOC_027328 lhfpl3 coding upstream 193882 22365061 ~ 22419743 (+)
XLOC_027327 guca1a coding upstream 262649 22343093 ~ 22350976 (+)
XLOC_027333 gnai1 coding downstream 27498 22680442 ~ 22714063 (+)
XLOC_027334 slc35e3 coding downstream 464613 23117557 ~ 23122395 (+)
XLOC_027335 mdm2 coding downstream 472745 23125689 ~ 23136195 (+)
XLOC_027336 trhde.2 coding downstream 570937 23223881 ~ 23408029 (+)
XLOC_027337 NA coding downstream 647945 23300889 ~ 23301228 (+)
XLOC_027326 NA non-coding upstream 270790 22338519 ~ 22342835 (+)
XLOC_027324 NA non-coding upstream 499922 22022625 ~ 22113703 (+)
XLOC_027323 BX537308.1 non-coding upstream 646181 21966094 ~ 21967444 (+)
XLOC_027338 AL935196.1 non-coding downstream 726318 23379262 ~ 23379378 (+)
XLOC_027339 NA non-coding downstream 779085 23432029 ~ 23505594 (+)
XLOC_027340 NA non-coding downstream 896930 23549874 ~ 23735971 (+)
XLOC_027341 NA non-coding downstream 1191640 23844584 ~ 23851648 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000019_03487868_03518631 SEMA3C coding CI01000019 null 3487824 ~ 3518853 (-)