CI01000019_03487868_03518631 (SEMA3C)


Basic Information

Item Value
gene id CI01000019_03487868_03518631
gene name SEMA3C
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000019
NCBI id null
chromosome length 5832599
location 3487824 ~ 3518853 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000019_03487868_03518631.mRNA
CGTGGATAAGAGAAATGTGACTTTAATTGGAACTGGAAGGAGTTATATGGACACTGAAGAGAAAAATAAGGAGGGATGGCTTTAGAAGAGTGTTAAAAGAGGATAAAGATGAGGAGGAGGGTATCAATGTGGCCTCCACTTCTCTATACATTAGTGAATGGCTAATGAGAAACAACAATGAATATTCATGAGTTTGGTCTTCATTAGAGAGACTTTGATGGTATGGTGAAGGGCCCTGCGTCTCTGTATAAGTTTGTGTGTTCTGGAATAAGATCAGGGTTCAGCAGCCTCATCATTGTCAGCAGTGCAAAATTACAGAAAACCCAGTCCTTTGAGCACTACACTTTGTCTGAGAAGGCCATGGACTACAGGATCCTTTTCATGGATGAGGATCAGGACCGTATGTACGTGGGCTGCAAGGACCATGTACTCTCGATGGACATTAATAACATCAGCCAGACCACGCTGAAGATCTTCTGGCCGGCATCCACCAGTAAGGTCGAGGAGTGTCAGATGGCTGGCAAAGACCCCACACATGGATGTGGAAACTTCTTACGAGTGATCCAGCCTTATAACAGGACGCATCTGTTCATCTGCGGCAGTGGAGCCTACAGCCCAGTGTGTGCATATGTTAACCGTGGCAGGCGTCCTGAGGAGCAAGTGTTTCAAATCTCCTCCCGAGCAGAATCAGGGAAAGGGAGGTGCTCCTTCAACCCACAAGTCAACACCGTCTCGGTCATGCTCAATCAGGAGCTGTTCTCTGGCATGTACATCGACTTCATGGGGACAGACGCTGCCATTTTCAGGAGCCTGACCACAAGGAACGCAGTGAGGACGGACCAACATAACTCCAAATGGCTGAGCGAGCCAGTGTTCATTGATGCCCACTTGATACCTGACGGCTCAGACCCAAACGACGCCAAACTTTACTTTTTCCTGCGCGAGAGACTGACAGATAGTAGTGGAAACACTAAGAACATCCACACTATGGTGGCTCGAGTGTGCCCTAATGACACTGGTGGTCAACGCAGTCTGGTGAACAAGTGGACCACTTTTCTGAAGGCTCGGATGGTATGTTCGGTTCTAGAAGAAGATGGAACCGAGACCCACTTTGATGAGCTTGAGAATGTGTTTTTATTGGAGACGGACCACCCAAAGGGCCTCCTCATCTTTGGAGTCTTCACCTCTACAAGTTCTGTGTTCAGAGGTTCTGCTGTCTGTGTTTACAACATGGCCGACATCCTGACGGTCTTCAACGGACCGTTTGCGCACAGGGAAGGGCCCAACTTCCAGTGGGTGGCTTTCCAGGGCCGGATCCCTTACCCACGACCGGGAACTTGTCCTGGTGGCGCATTCACCCCTCACATCCAGAGTACTAAAGAGTTTCCAGATGATGTGGTGACGTTCGTGAGGAATCACCCCGTCATGTTTAACCCCATTTACCCGGTCGGCAGGAAACCTCTGGTAGTGCGGACGCATGCCGATTACAAATACACCTCTATAGCTGTGGACCAGGTCACCGCTGCAGACGGACACTATCAGGTTCTATTCCTGGGCACAGATAAAGGCACGGTACAGAAGGTTGTGGTCCTGCCGTCAAACAGCTCTCTGGATGAGGATCTAATCCTGGAGGAGCTGGAAGTGTTTAAGAAGCAGTCTCCTATCACCAACCTAAGAATCTCTTCTAAAAAGCAACAGCTGTATGTTAGCTCTGAGCATGGAGTGTCCCAGGTGTCCTTGCACCGCTGCAACGCATACGGCTCTGCCTGTGCAGACTGCTGTTTAGCGCGGGACCCGTACTGCGCCTGGGATGGCCTCAGCTGTTCTCGATTCTACCCCACTGGCAAGAGGAGAAGCAGAAGGCAGGATATTATGCATGGGAATCCACTGACTCAGTGCAGAGGGTTCAATCTGAAAGCCTACAGGAATGCAGTGGAGATGACTCAGTATGGAGTCAAAAACAACACCACCTTCCTGGAGTGTCAGCCCAAATCTCCGCAAGCCTCGGTTAAATGGCTCATTCAGAGAGACAACGATCGCAGGAAAGAGGTGAAGCTGAGCGATCGTGTGGTGTCCACCAATCACGGTTTGCTCATCCGTTCGGTGCATTCTTCAGACCAGGGCCTGTACTATTGCCTGGCAACAGAGAATGGCTTCAAGCGCACTCTGGCTAAGATCCGTCTCCAGGTGCTGAGCGAGGCTCTGGTCAGCGCCCTGAGCAATAAACAGCAGTCACCCTGGGGCTGGGCAGCCACACTGCACCCTAAAGCCCTGGTGTCGGCCTTCAGCCCGGCTGAGACGTTGGCCATGCACCAATACTGCAAGGAACGCAAACAGATGCAGAGTCTGCAAAGCATACAGAGCCCCATGAGAGGCGATCTGGGCAAACTCAAACCCCTGCTGGACCACAGGAAGAGCAGGAACCGCCGGAACCACTTACTAGAGGAATAAAGGTGGAACATAATGGAAGGAGATGGATGATGAAAAGGAATAAA

Function

symbol description
sema3c Enables neuropilin binding activity. Acts upstream of or within enteric nervous system development. Predicted to be active in extracellular space. Predicted to be integral component of plasma membrane. Is expressed in caudal tuberculum and otic vesicle. Orthologous to human SEMA3C (semaphorin 3C).

GO: NA

KEGG:

id description
K06840 SEMA3; semaphorin 3

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000019_03487868_03518631.mRNA True 2495 mRNA 0.51 17 3487824 3518853

Neighbor

gene id symbol gene type direction distance location
CI01000019_03458890_03473706 GNAI1.L, GNAI1 coding downstream 14118 3458745 ~ 3473706 (-)
CI01000019_03319532_03331126 NA coding downstream 156511 3319149 ~ 3331313 (-)
CI01000019_03135155_03138908 NA coding downstream 348916 3134850 ~ 3138908 (-)
CI01000019_03122047_03127637 MDM2 coding downstream 360187 3121542 ~ 3127637 (-)
CI01000019_03055727_03057818 NA coding downstream 429823 3055454 ~ 3058001 (-)
CI01000019_03544753_03545061 NA coding upstream 25765 3544618 ~ 3546353 (-)
CI01000019_03618642_03619707 NDUFB2 coding upstream 99543 3618388 ~ 3619973 (-)
CI01000019_03675261_03718563 LHFPL3 coding upstream 156408 3675261 ~ 3718563 (-)
CI01000019_03734168_03738347 MGC84218, GUCA1A coding upstream 214590 3733443 ~ 3738473 (-)
CI01000019_03774441_03774909 LLPH coding upstream 255278 3774131 ~ 3775485 (-)
G109895 NA non-coding downstream 4838 3481996 ~ 3482986 (-)
G109794 NA non-coding downstream 169803 3313667 ~ 3318021 (-)
G109843 NA non-coding downstream 196022 3288087 ~ 3291802 (-)
G109766 NA non-coding downstream 318749 3168328 ~ 3169075 (-)
G109758 NA non-coding downstream 331287 3156306 ~ 3156537 (-)
G109897 NA non-coding upstream 33765 3552618 ~ 3552853 (-)
G109960 NA non-coding upstream 46966 3565819 ~ 3566018 (-)
G109959 NA non-coding upstream 186293 3705146 ~ 3710775 (-)
G109981 NA non-coding upstream 219917 3738770 ~ 3741994 (-)
G110007 NA non-coding upstream 283595 3802448 ~ 3803177 (-)
G109437 NA other downstream 1147066 2340203 ~ 2340758 (-)
CI01000019_01503557_01515831 NA other downstream 1969987 1503466 ~ 1517469 (-)
G107820 NA other downstream 2008683 1478851 ~ 1479141 (-)
G107779 NA other downstream 2064007 1423565 ~ 1423817 (-)
G110029 NA other upstream 342148 3861001 ~ 4015766 (-)
CI01000019_05571685_05572535 LAMTOR4 other upstream 2052087 5570940 ~ 5572535 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_027332 sema3c coding NC_007115.7 CM002888.2 22613625 ~ 22652944 (+)