CI01000019_03774441_03774909 (LLPH)


Basic Information

Item Value
gene id CI01000019_03774441_03774909
gene name LLPH
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000019
NCBI id null
chromosome length 5832599
location 3774131 ~ 3775485 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000019_03774441_03774909.mRNA
ACAGCATAAATATAGAAGTCTGTATATTGGTAATAATTACGTCTATAAGTGGTGCTTTTTCGCGATGTCTATAAGTAGAAAGGTATTTTTTTTTTTGCATATGAGGTGGCTAACTGGCTAACAAACATCTTCGTTGTCAGCTGAGTTTTCTTACACAGATCTCTTGCTTCTGAATATACTCAAAGATATATGGGTGATTGGTTATTTAGATAATTAATTACATATATGTGAGATTATGAATGATCATTGTTACCGGGTCGTCTGAGGTCTGTATCATTGCTTATGGAGTGGCCAATTTTACACATTTTAGGTGCCTCACTAGATTTGTACCTCTTCAAGAGTCATGGAGCCTCAAATAACGAGCTAATGAAGCGAATCAGGTGTCAAATAGGGAGAAACCCAAAATGTGGGACCCCCATGGTCATGAAAAATGTGGAAATATTAAGGAAACATTGTGTTTTCCAGCCCAGGAAGAAAAAAAGATACTTCTCTATGAATTTAAGCTGCATATATCTATATAGATATTTATGCTGCATACATATTTTTGTCTTTTTTCTCACCTTAGTTTCCATCAGGATGGCGAAGAGTTTACGCAGCAAGTGGAGGAGGAAGATGAGGGCGGAGAAAAGAAAGAAAAATGCCCCCAAAGAACTGGCACGACTCAAAACAGTGCTGGGTCAAGGAGAGAAAGGAGAGATCACCATGAAAGATGTAGCTGAGATCGCCACCGTGGTGCCGCCTGAGAAATTGAAGGAGAAACCAGGAGATGCAGAGATGTGTGAAGAAGATGCAGATGGTGAAAAGATGAATTTGGACATTAAACGCAATAAAAAGACAATGTTGGACGATCAAGGACAGTATCCGGTCTGGATGAACCAAAAGGAGGCGAGGAAGGTGAAAGCCAAACGTTTGGGTAAAAAAGGAAAACCTAAGCTGAAGAAGGGTCTCGCCTGGTAGATGAACTGACCTGCTTGAGCATGGACATTATTACAGTAACAGCTGTATAGGAGCCTCACTGTGCATCATTTTCATGTACAGTTTGTACGTTTCTATGGACTTTTCATGCAACCTCATGCAGAAGAATTCAGTGTAAATTTGTGAAATGTAATGCCGATTTGTTGGTGACAGACACTGCGATGTGATGGATGATTGAACGTCATGTTCAAGGTGCTTCAGTTCACTAGCTAATGTGGTGGGGGAAGAGTAAAAACACTGTAAGTCACGTGCATTCAGCGTACTACACGACTGACTCTTCCAGTAAAATAAA

Function

symbol description
llph Predicted to enable basal RNA polymerase II transcription machinery binding activity. Predicted to be involved in dendrite extension and positive regulation of dendritic spine development. Predicted to be located in chromosome. Predicted to be active in nucleolus. Is expressed in several structures, including alar plate midbrain region; digestive system; eye; lens placode; and midbrain. Orthologous to human LLPH (LLP homolog, long-term synaptic facilitation factor).

GO:

id name namespace
GO:0003674 molecular_function molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000019_03774441_03774909.mRNA True 1267 mRNA 0.40 2 3774131 3775485

Neighbor

gene id symbol gene type direction distance location
CI01000019_03734168_03738347 MGC84218, GUCA1A coding downstream 35658 3733443 ~ 3738473 (-)
CI01000019_03675261_03718563 LHFPL3 coding downstream 55568 3675261 ~ 3718563 (-)
CI01000019_03618642_03619707 NDUFB2 coding downstream 154158 3618388 ~ 3619973 (-)
CI01000019_03544753_03545061 NA coding downstream 227778 3544618 ~ 3546353 (-)
CI01000019_03487868_03518631 SEMA3C coding downstream 255278 3487824 ~ 3518853 (-)
CI01000019_04049137_04091649 ACSS3 coding upstream 273056 4048541 ~ 4091649 (-)
CI01000019_04168458_04170867 MYF5 coding upstream 392426 4167911 ~ 4171967 (-)
CI01000019_04178763_04180074 MYF6 coding upstream 402772 4178257 ~ 4180087 (-)
CI01000019_04447561_04470707 SYT1, SYT1A coding upstream 671412 4446897 ~ 4470818 (-)
CI01000019_04480726_04484009 NA coding upstream 703544 4479029 ~ 4484009 (-)
G109981 NA non-coding downstream 32137 3738770 ~ 3741994 (-)
G109959 NA non-coding downstream 63356 3705146 ~ 3710775 (-)
G109960 NA non-coding downstream 208113 3565819 ~ 3566018 (-)
G109897 NA non-coding downstream 221278 3552618 ~ 3552853 (-)
G109895 NA non-coding downstream 291145 3481996 ~ 3482986 (-)
G110007 NA non-coding upstream 26963 3802448 ~ 3803177 (-)
G110008 NA non-coding upstream 30932 3806417 ~ 3831874 (-)
G110027 NA non-coding upstream 74313 3849798 ~ 3850194 (-)
G110029 NA non-coding upstream 85516 3861001 ~ 4015766 (-)
G110082 NA non-coding upstream 225786 4001271 ~ 4001769 (-)
G109437 NA other downstream 1433373 2340203 ~ 2340758 (-)
CI01000019_01503557_01515831 NA other downstream 2256294 1503466 ~ 1517469 (-)
G107820 NA other downstream 2294990 1478851 ~ 1479141 (-)
G107779 NA other downstream 2350314 1423565 ~ 1423817 (-)
CI01000019_05571685_05572535 LAMTOR4 other upstream 1795455 5570940 ~ 5572535 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_027325 llph coding NC_007115.7 CM002888.2 22297839 ~ 22300326 (+)