CI01000019_03734168_03738347 (MGC84218, GUCA1A)


Basic Information

Item Value
gene id CI01000019_03734168_03738347
gene name MGC84218, GUCA1A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000019
NCBI id null
chromosome length 5832599
location 3733443 ~ 3738473 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000019_03734168_03738347.mRNA
ACTCTTAGGTCCCAGTGTCGTGTGTCTGTGAGAAGCGAAACGCTCGCCTGCACAGCAGACCAGTTGGGTTTCCTGACAGAGTAGCTCCAGTCCAGCTCTCCACAACAATCCGTTCTCAGTTTAGCGATGGGGAATTCAACGGGCAGCACCGTGGACGACCTGCAGGCCGTTGAAATGCATCTGTGGTATAAGAAGTTCATGACTGAGTGTCCATCTGGTCAGCTCACGCTGCATGAGTTCAAACAGTTCTTCGGGCTCAGAGGTCTGGATCCAGAGGCCAATGCCTACATCGAGCAGATGTTCCGCACATTTGACATGAACAAGGATGGTTATATAGACTTCATGGAGTACGTGGCCGCCCTCAGTCTCGTAATGAGAGGGAAGATGGAGCACAAACTGCGCTGGTATTTCAGACTTTACGATGTTGACGGCAACGGCTGCATAGACAGACACGAGCTCCTGAATATCATAAAGGCCATCCGCGCCATCAACGGAAGTGAGACACAGGAAGTGAGCGCTGAGGACTTCACAAACCGAGTGTTTGATAGGATCGACATCAACGGAGATGGGGAGCTTTCACTGGAGGAGTTTGTAGCAGGGGCACGCAGTGATGAAGACTTTATGGAGGTGATGATGAAGAGTTTAGACCTCTCACACATAGTGGCCATGATCCATAACCGGAGACACAGCGTATAAGAGATTGTCCACACTTACAGTCTCTTGATCAGAAAACAAGAGCAACCTTCAATTATCAAACTTCACCTCCACTGTCTAATGCTAAAACACAATCATATTAAAGAGAGACTGAGCTAAAGGGGCCAAGAGATGAAATTGGTGTGGGACGTCCCACATCTAATATACTGACTGTTTCCCAAACACTGAGCAGAAAGTGGCTTCATGGGAAAAGAATCAGTATGAAGTGGATGTCCATTTAGCTTTATTTTCTTATAACTTTATTATTAGCAAAAAAGAGAAGACAATTTTTAAATATATATTTATTTATATATTTATTGTATTAGATGACTCAGAGACATTTATAAATATTTGACTAAGTGGTAGTTCAATTACATTCATTCAAAAGTTTGGGGTCGGTCAGATTTTGTGGGCCTAATGTTTTTGAAAGAAGTCTTTTATGCTCACTAAGGCTGCATTTATTTAATTTTTATGGAAACTGATGTATTTTTCCTCCAATTTTTTGATAAAGTTCAAAAGAACAGCATTTATTAGAAACCAAAATCTTTTGTAACAATGTAAATGTCTTTATATCTTCAAATTTGATCAACAAAAGTATGCATTTCTGACCCCAATCTTTTGAACAAAAGTATATGTCCACTTTAAAGCTTAATTTAATTTTTTTTTTATGAATGTTCAAGGGAAGGTGTATATTTTTGGTACTGTAAAGGGTCACTGTTTTTAATAAA

Function

symbol description
guca1a Enables calcium ion binding activity and calcium sensitive guanylate cyclase activator activity. Is expressed in eye and retina. Human ortholog(s) of this gene implicated in cone-rod dystrophy 14. Orthologous to human GUCA1A (guanylate cyclase activator 1A).

NR:

description
Guca1a protein

GO:

id name namespace
GO:0008048 calcium sensitive guanylate cyclase activator activity molecular_function

KEGG:

id description
K08328 GUCA1; guanylate cyclase activator 1

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000019_03734168_03738347.mRNA True 1421 mRNA 0.41 4 3733443 3738473

Neighbor

gene id symbol gene type direction distance location
CI01000019_03675261_03718563 LHFPL3 coding downstream 14880 3675261 ~ 3718563 (-)
CI01000019_03618642_03619707 NDUFB2 coding downstream 113470 3618388 ~ 3619973 (-)
CI01000019_03544753_03545061 NA coding downstream 187090 3544618 ~ 3546353 (-)
CI01000019_03487868_03518631 SEMA3C coding downstream 214590 3487824 ~ 3518853 (-)
CI01000019_03458890_03473706 GNAI1.L, GNAI1 coding downstream 259737 3458745 ~ 3473706 (-)
CI01000019_03774441_03774909 LLPH coding upstream 35658 3774131 ~ 3775485 (-)
CI01000019_04049137_04091649 ACSS3 coding upstream 310068 4048541 ~ 4091649 (-)
CI01000019_04168458_04170867 MYF5 coding upstream 429438 4167911 ~ 4171967 (-)
CI01000019_04178763_04180074 MYF6 coding upstream 439784 4178257 ~ 4180087 (-)
CI01000019_04447561_04470707 SYT1, SYT1A coding upstream 708424 4446897 ~ 4470818 (-)
G109959 NA non-coding downstream 22668 3705146 ~ 3710775 (-)
G109960 NA non-coding downstream 167425 3565819 ~ 3566018 (-)
G109897 NA non-coding downstream 180590 3552618 ~ 3552853 (-)
G109895 NA non-coding downstream 250457 3481996 ~ 3482986 (-)
G109794 NA non-coding downstream 415422 3313667 ~ 3318021 (-)
G109981 NA non-coding upstream 297 3738770 ~ 3741994 (-)
G110007 NA non-coding upstream 63975 3802448 ~ 3803177 (-)
G110008 NA non-coding upstream 67944 3806417 ~ 3831874 (-)
G110027 NA non-coding upstream 111325 3849798 ~ 3850194 (-)
G110029 NA non-coding upstream 122528 3861001 ~ 4015766 (-)
G109437 NA other downstream 1392685 2340203 ~ 2340758 (-)
CI01000019_01503557_01515831 NA other downstream 2215606 1503466 ~ 1517469 (-)
G107820 NA other downstream 2254302 1478851 ~ 1479141 (-)
G107779 NA other downstream 2309626 1423565 ~ 1423817 (-)
CI01000019_05571685_05572535 LAMTOR4 other upstream 1832467 5570940 ~ 5572535 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_027327 guca1a coding NC_007115.7 CM002888.2 22343093 ~ 22350976 (+)