CI01000019_03675261_03718563 (LHFPL3)


Basic Information

Item Value
gene id CI01000019_03675261_03718563
gene name LHFPL3
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000019
NCBI id null
chromosome length 5832599
location 3675261 ~ 3718563 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000019_03675261_03718563.mRNA
ATGCTCCCAGCCACGGAGGCAGCCAAGATCTACCAGACCAACTACGTCAGGAACTCTCGAGCCATCGGGGTCCTGTGGGCCATCTTCACCATCCTCTTCGCCATAGTCAACGTGGTATGTTTTGTTCAGCCCTACTGGATTGGGGATGGCATGGACACGCCACAGGCCGGCTACTTCGGCCTCTTTCACTACTGCATAGGAAGCGGAATCTCCCGGGACCTGACGTGCCAGGGGAGCTTCACAGAGTTTGGCTCCATCCCGTCTAGCGCCTTCAAAGCGGCGTCTTTCTTCATTGGGATGTCCATGGTGCTGGTCCTCTCCTGCATCGGCTGCTTCGCTCTCTTCTTCTTCTGCAGTACAGCCACTGTGTATAAGATCTGCGGGTGGATGCAGCTGGCAGCAGGTACGTGTCTGGTGTTGGGCTGCATGATATATCCTGACGGCTGGGATGCTGATGAGGTGAAGAGGATGTGCGGAGAAGGGACGGACAAATACACCATCGGAGCATGCTCAGTGCGCTGGGCGTACATCCTGGCTATTATGGGCATCATGGACGCCCTTATTCTCTCTTTCCTGGCCTTCGTTTTGGGCAACAGGCAGGATGGACTCATGTCCGAGGAGCTGCTGGGAGACAGTAAGATTAACATT

Function

symbol description
lhfpl3 Predicted to be involved in sensory perception of sound. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in central nervous system. Orthologous to human LHFPL3 (LHFPL tetraspan subfamily member 3).

GO:

id name namespace
GO:0005575 cellular_component cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000019_03675261_03718563.mRNA True 648 mRNA 0.55 2 3675261 3718563

Neighbor

gene id symbol gene type direction distance location
CI01000019_03618642_03619707 NDUFB2 coding downstream 55288 3618388 ~ 3619973 (-)
CI01000019_03544753_03545061 NA coding downstream 128908 3544618 ~ 3546353 (-)
CI01000019_03487868_03518631 SEMA3C coding downstream 156408 3487824 ~ 3518853 (-)
CI01000019_03458890_03473706 GNAI1.L, GNAI1 coding downstream 201555 3458745 ~ 3473706 (-)
CI01000019_03319532_03331126 NA coding downstream 343948 3319149 ~ 3331313 (-)
CI01000019_03734168_03738347 MGC84218, GUCA1A coding upstream 14880 3733443 ~ 3738473 (-)
CI01000019_03774441_03774909 LLPH coding upstream 55568 3774131 ~ 3775485 (-)
CI01000019_04049137_04091649 ACSS3 coding upstream 329978 4048541 ~ 4091649 (-)
CI01000019_04168458_04170867 MYF5 coding upstream 449348 4167911 ~ 4171967 (-)
CI01000019_04178763_04180074 MYF6 coding upstream 459694 4178257 ~ 4180087 (-)
G109960 NA non-coding downstream 109243 3565819 ~ 3566018 (-)
G109897 NA non-coding downstream 122408 3552618 ~ 3552853 (-)
G109895 NA non-coding downstream 192275 3481996 ~ 3482986 (-)
G109794 NA non-coding downstream 357240 3313667 ~ 3318021 (-)
G109843 NA non-coding downstream 383459 3288087 ~ 3291802 (-)
G109981 NA non-coding upstream 20207 3738770 ~ 3741994 (-)
G110007 NA non-coding upstream 83885 3802448 ~ 3803177 (-)
G110008 NA non-coding upstream 87854 3806417 ~ 3831874 (-)
G110027 NA non-coding upstream 131235 3849798 ~ 3850194 (-)
G110029 NA non-coding upstream 142438 3861001 ~ 4015766 (-)
G109437 NA other downstream 1334503 2340203 ~ 2340758 (-)
CI01000019_01503557_01515831 NA other downstream 2157424 1503466 ~ 1517469 (-)
G107820 NA other downstream 2196120 1478851 ~ 1479141 (-)
G107779 NA other downstream 2251444 1423565 ~ 1423817 (-)
CI01000019_05571685_05572535 LAMTOR4 other upstream 1852377 5570940 ~ 5572535 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_027328 lhfpl3 coding NC_007115.7 CM002888.2 22365061 ~ 22419743 (+)