CI01000019_03055727_03057818


Basic Information

Item Value
gene id CI01000019_03055727_03057818
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000019
NCBI id null
chromosome length 5832599
location 3055454 ~ 3058001 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000019_03055727_03057818.mRNA
AAAAACAGCAACAAAAACAAACTGGTGCAGTCTGGAACACGAAACATAATAAACAGTGCTCCAGCCAATAACCGACAAGAATGATTTGGGGGTGGAGTTTTGGGGTTAGTGCGCGTGCACATGAAGGGGGGTGTGTAGAAGACAGAAGCATAAAGAGGGAAGTTCGAATTATGTGATCTTGATATGGCCGACACACGACCAAAGAGACGATGTTCTAATGAACACCTGGAAAAGAAAAGGGAAAAGGAGAAGGAACGCGCAAAGTCCCGAATTTACATAGGAAAAGCCTTTGAAAGGTGGCGAGAGCTACGGTGGCAGAAGGGCTTCCAATCCGACATTCAGGTGGCTCTTTTTTTGCTGGACAGAGAATCTGCAGTGATAGAGAAGAGCACATACATACAAATGTGGAGATTAGCAGCTTTGTTCACTGAGAGCTGGAGGGTTTATCTATTATCTGTTTCCTTTGGACCCCTGCGCTTCGCTGCTCTCTGGGGAAAATCCAGAGCGACTCAAACACACATGGAGAAAAGCTTCGTTAAAGAACCGCTCAAGTGTTTTTGCCTTCGAGGTGCAACAGGTTTGCGTGAGGGTCTCTGAATCAGACCATGACCCAGATGACACGAAAAAGCTGCAAATAGTTTCATATTCCTTGAAATGTAAAGCAACCGACGCTGTGACGTCAGCAGATCGATTTGACTATTAAAATGATAATCTGCCCGGGAAATTCTCCAGTCAGCCGGGGAGAATCTAAAGCGTCTAAAGGTTTCTGCGAACGAGTCCCACACCGCGCCTGGAGATATGCAGATTCAATTTGAAAACACACATATAAAATGAGTTCAAGAGATTTAATGAGAACCAGCTCCCAATAAA
>TU124661
AATACACTTACATACTAAACATTTCCCTTAGCTGTCATCTTGGGTGTGAAGTACGAAGTAACCAAGAACGGATATTTGTAATCCCAAATGTGGCTTCATACATGAATGTGGCTTATCTCTCCTAACAAAGCTAAATTTTGTGTCACTTCCTTGTCTACATCTGCTCCGGCTCAAGGGCGAGACACTCCAGATCTCCATCCTCAGAGAATCTGCAGTGATAGAGAAGAGCACATACATACAAATGTGG

Function

NR:

description
PREDICTED: uncharacterized protein LOC103368241

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000019_03055727_03057818.mRNA False 870 mRNA 0.45 2 3055454 3058001
TU124661 True 247 lncRNA 0.42 1 3055916 3056162

Neighbor

gene id symbol gene type direction distance location
CI01000019_03000691_03020851 TRHDE coding downstream 34603 2999635 ~ 3020851 (-)
CI01000019_02907262_02983656 NA coding downstream 69515 2907170 ~ 2985939 (-)
CI01000019_02893150_02903846 NA coding downstream 151528 2891564 ~ 2903926 (-)
CI01000019_02601366_02629849 NA coding downstream 424305 2601059 ~ 2631149 (-)
CI01000019_02502701_02503852 NA coding downstream 551580 2502223 ~ 2503874 (-)
CI01000019_03122047_03127637 MDM2 coding upstream 63541 3121542 ~ 3127637 (-)
CI01000019_03135155_03138908 NA coding upstream 76849 3134850 ~ 3138908 (-)
CI01000019_03319532_03331126 NA coding upstream 261148 3319149 ~ 3331313 (-)
CI01000019_03458890_03473706 GNAI1.L, GNAI1 coding upstream 400744 3458745 ~ 3473706 (-)
CI01000019_03487868_03518631 SEMA3C coding upstream 429823 3487824 ~ 3518853 (-)
G109706 NA non-coding downstream 11375 3043876 ~ 3044079 (-)
G109704 NA non-coding downstream 22255 3032827 ~ 3033199 (-)
G109693 NA non-coding downstream 96621 2958574 ~ 2958833 (-)
G109651 NA non-coding downstream 246583 2807241 ~ 2808871 (-)
G109715 NA non-coding upstream 13346 3071347 ~ 3071879 (-)
G109753 NA non-coding upstream 84703 3142704 ~ 3142932 (-)
G109758 NA non-coding upstream 98305 3156306 ~ 3156537 (-)
G109766 NA non-coding upstream 110327 3168328 ~ 3169075 (-)
G109843 NA non-coding upstream 230086 3288087 ~ 3291802 (-)
G109437 NA other downstream 714696 2340203 ~ 2340758 (-)
CI01000019_01503557_01515831 NA other downstream 1537617 1503466 ~ 1517469 (-)
G107820 NA other downstream 1576313 1478851 ~ 1479141 (-)
G107779 NA other downstream 1631637 1423565 ~ 1423817 (-)
CI01000019_03618642_03619707 NDUFB2 other upstream 560387 3618388 ~ 3619973 (-)
G110029 NA other upstream 803000 3861001 ~ 4015766 (-)
CI01000019_05571685_05572535 LAMTOR4 other upstream 2512939 5570940 ~ 5572535 (-)

Expression


Co-expression Network