Gene
RNA
| Item | Value |
|---|---|
| gene id | G109753 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000019 |
| NCBI id | null |
| chromosome length | 5832599 |
| location | 3142704 ~ 3142932 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU124716 | True | 229 | lncRNA | 0.41 | 1 | 3142704 | 3142932 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000019_03135155_03138908 | NA | coding | downstream | 3796 | 3134850 ~ 3138908 (-) |
| CI01000019_03122047_03127637 | MDM2 | coding | downstream | 15067 | 3121542 ~ 3127637 (-) |
| CI01000019_03055727_03057818 | NA | coding | downstream | 84703 | 3055454 ~ 3058001 (-) |
| CI01000019_03000691_03020851 | TRHDE | coding | downstream | 121853 | 2999635 ~ 3020851 (-) |
| CI01000019_02907262_02983656 | NA | coding | downstream | 156765 | 2907170 ~ 2985939 (-) |
| CI01000019_03319532_03331126 | NA | coding | upstream | 176217 | 3319149 ~ 3331313 (-) |
| CI01000019_03458890_03473706 | GNAI1.L, GNAI1 | coding | upstream | 315813 | 3458745 ~ 3473706 (-) |
| CI01000019_03487868_03518631 | SEMA3C | coding | upstream | 344892 | 3487824 ~ 3518853 (-) |
| CI01000019_03544753_03545061 | NA | coding | upstream | 401686 | 3544618 ~ 3546353 (-) |
| CI01000019_03618642_03619707 | NDUFB2 | coding | upstream | 475464 | 3618388 ~ 3619973 (-) |
| G109715 | NA | non-coding | downstream | 70825 | 3071347 ~ 3071879 (-) |
| G109706 | NA | non-coding | downstream | 98625 | 3043876 ~ 3044079 (-) |
| G109704 | NA | non-coding | downstream | 109505 | 3032827 ~ 3033199 (-) |
| G109693 | NA | non-coding | downstream | 183871 | 2958574 ~ 2958833 (-) |
| G109758 | NA | non-coding | upstream | 13374 | 3156306 ~ 3156537 (-) |
| G109766 | NA | non-coding | upstream | 25396 | 3168328 ~ 3169075 (-) |
| G109843 | NA | non-coding | upstream | 145155 | 3288087 ~ 3291802 (-) |
| G109794 | NA | non-coding | upstream | 170735 | 3313667 ~ 3318021 (-) |
| G109895 | NA | non-coding | upstream | 339064 | 3481996 ~ 3482986 (-) |
| G109437 | NA | other | downstream | 801946 | 2340203 ~ 2340758 (-) |
| CI01000019_01503557_01515831 | NA | other | downstream | 1624867 | 1503466 ~ 1517469 (-) |
| G107820 | NA | other | downstream | 1663563 | 1478851 ~ 1479141 (-) |
| G107779 | NA | other | downstream | 1718887 | 1423565 ~ 1423817 (-) |
| G110029 | NA | other | upstream | 718069 | 3861001 ~ 4015766 (-) |
| CI01000019_05571685_05572535 | LAMTOR4 | other | upstream | 2428008 | 5570940 ~ 5572535 (-) |
