XLOC_027361 (SCYL2)


Basic Information

Item Value
gene id XLOC_027361
gene name SCYL2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 26053044 ~ 26082119 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00053832
CATAAACTTGAATAAtagatatataataataatatatgacgttgatgataattattattattattattattattattattattattattattattattattattattattataaatctgtAGCCCCAACAAAAAGCAAGTACATTTGATGTCATAATGAGAATATGATGCTGATGATACACAGGGCAACTTTTTGAGCAATGTTGGCCAATATTTGCAATTTTGCAATGATAGTAATTAGCTATTTTTCTGTTTAGAATAGGCAacattatttttttctgcaaCTAATCAATGAATATTGttaaaagtattttgaaaatcaTGACTTTTATTAGAGATACTGAAGCTCTGCGTGTTTCCTCCGGCTTCACCGCAGACTCTCAGGTGTTTTGATGAAGTGTCATGGAGGCAGTGAGCCACCAGCACTGCTGACGGTTTTCCGACTGTCTCATTCCTCATTTTAACCTCTCAATCTCCCTGTCAGCTCCTCTGGTGTAAAGGTTGACAGCCAGTAAAATCATGGAGTCGATGTTGAATAAACTGAAGAGCACCGTGACCAAAGTGACGGCCGATGTTACCAGCGCCGTCATGGGAAACCCGGTCACACGAGAGTTCGAGGTGGGCAAACACATCGCCAGCGGTGGTCCAGGTATGAGCTGGAGGATCTACAATGGCACCAAGAAATCTACAAAACAGGAAGTGGCCGTATTTGTGTTTGACAAGAAGGTCATTGATCGCTATCAGAAGTTTGAGAAGGACCAGATTATCGATTCACTGAAGAAAGGAATTCAACAGCTTACCAGATTACGACATCCACGTCTCCTGACGGTTCAGCACCCGCTTGAAGAGTCCAGAGACTGTTTGGCGTTTTGCACAGAGCCTGTGTTTGCCAGCCTAGCGAATGTGCTCGGCCAGTGGGACAACCTGCCCAGTCCTGTTCCCACAGACATCAAAGATTACAAACTCTACGATGTAGAGACCAAATACGGCTTACTGCAGGTCTCAGAGGGTTTGTCGTTCCTCCACAGTGGAGTTAAAATGGTTCATGGTAACTTGTGCTCAGAGAACATCATCCTGAATAAAAGCGGAGCCTGGAAGATCATGGGCTTTGACTTCAGCATCTCCTCCAGCAACCCGTCTGATGCTGAGCCCAAGTATGTGTGTAAAGAGTGGGACCCCAATCTCCCGCCTCTTTGCCTCCCGAACCCAGAATATGTGGCTCCTGAATACATCCTGTCGGTCAGCTGTGATTCAGCCTCTGACATGTACTCACTGGGCGTCTTGATCCACGCCGTGTTTAATGAGGGCAAGCCTGTCTTTAAGGTCAACAAGCAGGACATATTCAAGAGCTTCAGTCGACAGCTGGACCAGCTGAGTCATCTGAGTCCAGGAGTGTTGAGTCAGATCCCCGAGGAGGTCAGACAACATGTGAAGATGCTGCTCAGCGTCACCTCCAACGTGCGTCCAGACGCAGACCAGATGACAAAGATTCCCTTCTTCGATGATGTTGGAGCGATGACTCTTCAGTACTTCGACTCGCTTTTCCAGCGGGACAACCTACAGAAGTCTCAGTTCTTTAAAGGACTCCCGAAAGTGCTGCCTAAGCTGCCCAAGAGAGTTGTTGTGTATAGAATCCTTCCAGCCCTTATGTCTGAGTTTGTAAATCCTGACATGGTGCCCTTCATTCTTCCAAACGTGCTGCTCATTGCTGAGGAGTGTACAAAAGAGGAGTATGTGCGCCTCGTTCTCCCCGACCTCACCCCAGTTTTCAAAATGCAGGAGCCAGTACAGATTCTGCTGATATTTTTGCAAAAGATGGACTTGCTTTTGACCAAAACGCCTCCTGAAGACATCAAGAACAGTGTTCTGCCTATGGTTTACAGAGCAGTGGAGGCCCCTTCTGTTCAAATACAgGAACTTTGTCTTAACATCATTCCCACATTTGCCAATTTGATTGAGTACCCATCTATGAAGAACTCTCTTATTCCTCGTATCAAATCTACCTGTTTACAGACATCCTCACTGGCGGTGAGGGTGAACTCTTTGGTTTGCCTTGGGAAGATACTGGAGTATCTGGATAAATGGTTTGTCATTGATGAAATTCTACCATTCCTGCAGCAGATTCCATCCAGAGAACCAGCTGTGCTCATGGGCATTCTGGgCATCTACAAGTGCACTTTTACCCATAAGAAACTGGGCATCCCAAAGGAGCACCTTGCTGGAAAAAGTTTACCTCATCTTGTGTCGCTTAGTATTGATAACAACCTTAACCTTAACCAGTTTAACTCTTTCATGGCTGTGATCAAGGACATGTTGACTCGCATGGAGGCCGAACACAAGGTCAAACTGGAGCAGCTACACATCATGCAGGAGCAGCAGAGGAGTTTAAATATTACAAACCCCATAAACCAATCAGAGGACACAAAGAGCACACCAAGCCCAGCCACGCAAGTCAGAGATATCGATGACATCTTTGGTGGCAGTTCAGCAAATGCCGGCGTGAATGGTAAAGAAAACGGTTCATCCACTGTCTCGCAGCCTTCTCGGGTGTCTCTCACATTGGAAGAAAAGCAGCGATTGGCTAAAGAACAGGAACAGGCTGCTAAACTAAGAAGTCAGCAGCCTTTAGCTCCACAGAGCATCAAATCAGCCACGACAACACCTCAGGCAAAGGATCTAACCAGCAGTCTTCTGAACAACATGACGTCCCTCAACAACATGTCCTTAAACTCTGGCACCAGAACGATGCCCATGCAGGGCAACACTATCTCATCCACCTTCCCGGCAGCACCGACCATGGGTGGAATGAGTACCATGAGCGTCAGCAATGGCTTCAATTCCCCCATTGGTTTCCAGACGGGAGGAATGGGGATGGGAATGAGAGCTCCCACTCCTGCCCTCTACGGCGGCATGGCCACCACAACCAGTACTCCAAATTTCAGTGCCCTCACCCAAAATCATAACCAAAACCAGCCCGGCAAACCCCCAGACATGTCAGCACTAGACTCTCTTTTCGCTTCTAACAAACCCAAAGTCAGCCTGAACCAAATGGCCCCTAAACCGACCCCAGGAACCAATGCACCTTCTCCATGGATCAATCAGTTTGGATCAGGCCAACCTCCCCAATCTGCACCCATACAGTCAAATCCGATGGGGATGTCAGGAGTTCAGGGTGGTTTTGGCATGCAAGCAAATCCGTTCTTTAACCCTCAGAACTTCTCGCAACCTGCGGCCTCTTCCACAATGAACACTGGGATGATGAAGCAAAGCGCATCGGTCAACAATGACCTTAAAGACCTTTTCGGATAAAACGTATGCCTTTTGGTTAACATTTGtgtgcgattttaaaaaggaaagaaaatcaTCGGCCAAGATAACAGTCGAAATGTTGGTGGTAAACTATGGGATCCTTGAAGAACAGTGTTTAAATAGGgttttcagtcttttttttttgctcataacAATGGTTTGCCTTCTTCAAACAGTCGACTTATGTGTGAATCAAAATCAGCcgacacaaaacaaacacatttctaTTGAAAGATTGGGCTCTTCTCCAGAAAGCAGCTTCTGTcggttgttgttgtttattttctgtATCATTTAATGCAAAAAGATTCACTCGGAAAAGGGGTGAAAAAGTTGAGGCATCTATTGAAGCTCAGTATCTGGCTTCACTTTCACCTCACATTTAAATCTTGCTGAATGAGCCACCTTTTTGTAACAGGACAAATGTCATTGATGGCTGGATTTGGCTATGGATTTGCTGATAGAGTCTCACAAAAGTGTTCACTTTTATATGTTAAAGAAAACACTTTACTCTTTAGTTTAACcattattttgatgcatttagaCAAACTCCaagtctggcgggagcacttttagcttagcttagcatagacaattaaatcagattagaccattagcatctcactcaaaaacacCCATGTAGTTTgaaaattttcttatttaaagacTCTTCTGTAGCTATATTGTTTACTAAGAATGATGGAAAGTGGttgaatgagagtatagttcatagccatatcagcctagaaaatagcaatttcaaaaatagcaacttttcattttccatcagtttTAGTACATGAACAAGTACAAAAGAATTACTGAAACTCTTAGGACATTTTTGAGTGAGCTTTACAGTATAATCAGATTCCTATGCTAAGTTAAAAAGTGCTTCAGCCAGAGATTGATGGAATAGAATCAAAACTGGTAAAACTCAACTTCGAgtggtaaaataagcctatttccaaaaaagtggaATGTTCCTTTAAGTCATAGATATTAAACCTGAtttctggagggctgcagctctgcagttttgctccaaccctaatcaaacacagctgatgcaactaatcaaggtgttcaaggtaattatttggatcagctgtgtttgattagaattATAAGCGATAAGCAAATGAAGATGAGGTGCACATAGTCGGGCCTGAATGAGTCATTTTATAATGTGTTCTTTGTGTATATACTCTGTATATGGTGATTTGTTGCTTGAGTTTTATACTGATACATGATCCATTGAGGTGAAACTTCTTAAATAAGGACACTGGTATACTGTAGGTGCACTAAATGTTATagagctaaaaaaaaactattgggtTTGAGATGTCTTGGGATATCGTCAGTACTTTAAAGTGAGTTTGTTTGTCTTTGTTATGGCTTCTGTAAGACAGAATTCGAAAGCCTCCTTTATGGAACACTTGCAAAATGAATGTCTGTTTGAAACTTCTTAGGCGAATCGCATGAAAATGGTCATGTTTCAATCCAAAATCAAAACACCATGTCAGGTTTGCTTATTTGTGAAAACTGCAAGTAAAATGTTCAttgcagttaaaaataaaattaaatcagtaCATTGGATACAACTCatgacaatatattttatgtgcaTCAGGTTTCAGTGATatttaatatcatattttttcATGTTACAGTAGTAACTGTGGAATTAATAAGAATTGCGGTAATGAGAAATCTATTTTTTGATAATGCTAACTAATATATTTCTTTTTCACATTCCAGATATCCTTCTTTAGCATTTTTTGTAATGAGATAAATCGGGAGTTCTCAAATTTAGTCCTAGAGATccagtgttctgcagattttagctctaacttgcctcaacaaacctgcaaggatgtttctagaaagcctagtaagagcttgattagctagcctagtGTCTGATTGGGATTGGAGCTAAATCATCAGGACACCTGACTTCCAGGACCGTGATTGAGAATAagataaattattacattttttttgtcacattgctggaattttttattgcattttagtaATGATatagcaatatttattttctttttgctcCAAGGAAAATTAAGATAATGattaagtttgtttttttccatattggatgtttcagcagtgaaattttcACATTACGGCACGCGTGTCAAATctagttcctggagagccacagctctgcacagtttaatttCAACCCTTATTTAACACACCtggtcaaactaattgagtccttcaggcttgtttgaaacctacagctaagtgtgttgaagcagggttggaactaaagcagagctgtggccctccaggaactggatttaaaaaaaaaaaaaaaaggtcacaaaTAGGCATCTTATGCAAATTAAATGTTCTGCATATTTAGATTTTGGCTTGAAACATGATTTTTTCCCCCCTGCTGAATCGCTGGAAAATGGTAAACGGTTGCACAAATTGATTGCAGCAGCTTGTTTACCACTAAGATTTAAGATAGAAGAGCGTGTTTCTTCAATGAAGCTTGATGTGTTTGTTTCCCTTTCAGTTCTCTGCTGTTACTTCCTGCTCTGTCTTTGTTAAGAAATCTGTATTATTGTTGCGTTTCTTAAGAAAGTTAGTTACTGGTCATATCATGTCGATACATTGTCCACTTTTCTTTTTTCGGGGGGTAGTGGGGTGGGGCAGTTTCCAGTTGTGAATCGTGACCAATTCAATTCCATATCATGTTGTTTTGTATCATGACCAAACAAAATGCTGCAACACAGCATATCACCAAAATGTGTATTATTTCTGGAAAAAAAGATGAAGTGTACAGTATATAGAGAGGAACTGCCACTTTATTTTTTTcgtcattttgtttttatcaataCTTGCGAGTGAATCACTTTCCTGAGGAGAATTTTTAATATCCAGACAGGTTTTACTCAAAGGGAATGAGAGGCCTTATGTTGAGAGTTGTGCAATAACAGGTCTGTGTTGGAGATTGTATAAATCAATCACTTTTCTGTACGAGTGTTTCTGTACATGCAGTTTTCAGATTAATTATTGTAGATAAAACGTCtggattgttttaatttaaagaatGTGAACTGGATTGTTGGTAAAATGGTGATTTTTGGAATcaaataaattgattattaaaggGTAATACCTTTTCACTTCcaacttcttttttatttatttttcattatccTGTTTGAGATTACAaatcaataatatatattttttttttataaaaggaaaaaaaaaagtgtaaagtgatttttttttttaaaccatacatTCTTACAGCTATGGAATAAACAAAGACCTCTCGAAATTTTCTCAGATTggggcaggggtggccaaccctgttcctggagagccatcttcctgcagatttcaggtgctacccatatcaaacacacctgaaccaattaatttggacctgaacaccacgtgataattacaggcaggtgtgtccATCCCTGGATTGAGGTATATGCAcgcagacttttatttcagccagccagtctttccattataaaattgctccgtttaaggtctgatttctttaaaaattagtaATCTTCACTACATGACTGATATACCAGGGTTTCCAACGGGGCCTTAAAAAgtatcaaaagttgataaatcaattatgataaaattaaggcccttaaaaaggtattaaaagtCCTAATCATgttttttacgaggtcttaaattttgttcaagcgttgtccaaagtgtttgactccataaaaaagcataaatatatttaaacattacaacGGCGTGCTCCGAGTTCTATTGCATGCTTGTGCTCTATTTATTTAACGACAACTGTTTGTTAACAACtgttaagttaaaggtttgatactaaTTAGAACTAGAAGTGGTgacgaggtcttaaaatattttgagaaggtctttaaaaggtattgaaattaccttaggattcctgcatatacaaTACTAGGcaggtctcagaccagacaagaagcactgtattaaattccattttctCCCCcagcatgtctttaaaatatgattgtttatttcaccccagtattttcaatggactTTCTGCGcttgcctgctgatcctgacg
>TCONS_00053833
ATGGAGTCGATGTTGAATAAACTGAAGAGCACCGTGACCAAAGTGACGGCCGATGTTACCAGCGCCGTCATGGGAAACCCGGTCACACGAGAGTTCGAGGTGGGCAAACACATCGCCAGCGGTGGTCCAGGTATGAGCTGGAGGATCTACAATGGCACCAAGAAATCTACAAAACAGGAAGTGGCCGTATTTGTGTTTGACAAGAAGGTCATTGATCGCTATCAGAAGTTTGAGAAGGACCAGATTATCGATTCACTGAAGAAAGGAATTCAACAGCTTACCAGATTACGACATCCACGTCTCCTGACGGTTCAGCACCCGCTTGAAGAGTCCAGAGACTGTTTGGCGTTTTGCACAGAGCCTGTGTTTGCCAGCCTAGCGAATGTGCTCGGCCAGTGGGACAACCTGCCCAGTCCTGTTCCCACAGACATCAAAGATTACAAACTCTACGATGTAGAGACCAAATACGGCTTACTGCAGGTCTCAGAGGGTTTGTCGTTCCTCCACAGTGGAGTTAAAATGGTTCATGGTAACTTGTGCTCAGAGAACATCATCCTGAATAAAAGCGGAGCCTGGAAGATCATGGGCTTTGACTTCAGCATCTCCTCCAGCAACCCGTCTGATGCTGAGCCCAAGTATGTGTGTAAAGAGTGGGACCCCAATCTCCCGCCTCTTTGCCTCCCGAACCCAGAATATGTGGCTCCTGAATACATCCTGTCGGTCAGCTGTGATTCAGCCTCTGACATGTACTCACTGGGCGTCTTGATCCACGCCGTGTTTAATGAGGGCAAGCCTGTCTTTAAGGTCAACAAGCAGGACATATTCAAGAGCTTCAGTCGACAGCTGGACCAGCTGAGTCATCTGAGTCCAGGAGTGTTGAGTCAGATCCCCGAGGAGGTCAGACAACATGTGAAGATGCTGCTCAGCGTCACCTCCAACGTGCGTCCAGACGCAGACCAGATGACAAAGATTCCCTTCTTCGATGATGTTGGAGCGATGACTCTTCAGTACTTCGACTCGCTTTTCCAGCGGGACAACCTACAGAAGTCTCAGTTCTTTAAAGGACTCCCGAAAGTGCTGCCTAAGCTGCCCAAGAGAGTTGTTGTGTATAGAATCCTTCCAGCCCTTATGTCTGAGTTTGTAAATCCTGACATGGTGCCCTTCATTCTTCCAAACGTGCTGCTCATTGCTGAGGAGTGTACAAAAGAGGAGTATGTGCGCCTCGTTCTCCCCGACCTCACCCCAGTTTTCAAAATGCAGGAGCCAGTACAGATTCTGCTGATATTTTTGCAAAAGATGGACTTGCTTTTGACCAAAACGCCTCCTGAAGACATCAAGAACAGTGTTCTGCCTATGGTTTACAGAGCAGTGGAGGCCCCTTCTGTTCAAATACAgGAACTTTGTCTTAACATCATTCCCACATTTGCCAATTTGATTGAGTACCCATCTATGAAGAACTCTCTTATTCCTCGTATCAAATCTACCTGTTTACAGACATCCTCACTGGCGGTGAGGGTGAACTCTTTGGTTTGCCTTGGGAAGATACTGGAGTATCTGGATAAATGGTTTGTCATTGATGAAATTCTACCATTCCTGCAGCAGATTCCATCCAGAGAACCAGCTGTGCTCATGGGCATTCTGGgCATCTACAAGTGCACTTTTACCCATAAGAAACTGGGCATCCCAAAGGAGCACCTTGCTGGAAAAAGTTTACCTCATCTTGTGTCGCTTAGTATTGATAACAACCTTAACCTTAACCAGTTTAACTCTTTCATGGCTGTGATCAAGGACATGTTGACTCGCATGGAGGCCGAACACAAGGTCAAACTGGAGCAGCTACACATCATGCAGGAGCAGCAGAGGAGTTTAAATATTACAAACCCCATAAACCAATCAGAGGACACAAAGAGCACACCAAGCCCAGCCACGCAAGTCAGAGATATCGATGACATCTTTGGTGGCAGTTCAGCAAATGCCGGCGTGAATGGTAAAGAAAACGGTTCATCCACTGTCTCGCAGCCTTCTCGGGTGTCTCTCACATTGGAAGAAAAGCAGCGATTGGCTAAAGAACAGGAACAGGCTGCTAAACTAAGAAGTCAGCAGCCTTTAGCTCCACAGAGCATCAAATCAGCCACGACAACACCTCAGGCAAAGGATCTAACCAGCAGTCTTCTGAACAACATGACGTCCCTCAACAACATGTCCTTAAACTCTGGCACCAGAACGATGCCCATGCAGGGCAACACTATCTCATCCACCTTCCCGGCAGCACCGACCATGGGTGGAATGAGTACCATGAGCGTCAGCAATGGCTTCAATTCCCCCATTGGTTTCCAGACGGGAGGAATGGGGATGGGAATGAGAGCTCCCACTCCTGCCCTCTACGGCGGCATGGCCACCACAACCAGTACTCCAAATTTCAGTGCCCTCACCCAAAATCATAACCAAAACCAGCCCGGCAAACCCCCAGACATGTCAGCACTAGACTCTCTTTTCGCTTCTAACAAACCCAAAGTCAGCCTGAACCAAATGGCCCCTAAACCGACCCCAGGAACCAATGCACCTTCTCCATGGATCAATCAGTTTGGATCAGGCCAACCTCCCCAATCTGCACCCATACAGTCAAATCCGATGGGGATGTCAGGAGTTCAGGGTGGTTTTGGCATGCAAGCAAATCCGTTCTTTAACCCTCAGAACTTCTCGCAACCTGCGGCCTCTTCCACAATGAACACTGGGATGATGAAGCAAAGCGCATCGGTCAACAATGACCTTAAAGACCTTTTCGGATAAAACGTATGCCTTTTGGTTAACATTTGtgtgcgattttaaaaaggaaagaaaatcaTCGGCCAAGATAACAGTCGAAATGTTGGTGGTAAACTATGGGATCCTTGAAGAACAGTGTTTAAATAGGgttttcagtcttttttttttgctcataacAATGGTTTGCCTTCTTCAAACAGTCGACTTATGTGTGAATCAAAATCAGC

Function

symbol description
scyl2 Predicted to enable ATP binding activity and protein kinase activity. Predicted to act upstream of or within protein phosphorylation. Human ortholog(s) of this gene implicated in arthrogryposis multiplex congenita-4. Orthologous to human SCYL2 (SCY1 like pseudokinase 2).

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004672 protein kinase activity molecular_function

KEGG:

id description
ko01001 Protein kinases
ko04131 Membrane trafficking

ZFIN:

id description
ZDB-GENE-041210-205 Predicted to enable ATP binding activity and protein kinase activity. Predicted to act upstream of or within protein phosphorylation. Human ortholog(s) of this gene implicated in arthrogryposis multiplex congenita-4. Orthologous to human SCYL2 (SCY1 like pseudokinase 2).

Ensembl:

ensembl_id ENSDARG00000032627

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00053832 False 7401 mRNA 0.40 18 26053044 26082119
TCONS_00053833 True 2993 mRNA 0.48 17 26056548 26078229

Neighbor

gene id symbol gene type direction distance location
XLOC_027360 DEPDC4 coding upstream 1926 26036682 ~ 26051118 (+)
XLOC_027359 metap2a coding upstream 36503 25950372 ~ 26016541 (+)
XLOC_027358 vezt coding upstream 106074 25912308 ~ 25946970 (+)
XLOC_027357 NA coding upstream 297695 25754037 ~ 25755349 (+)
XLOC_027356 lamb1b coding upstream 301683 25704579 ~ 25751361 (+)
XLOC_027362 tnni1d coding downstream 275102 26357221 ~ 26362129 (+)
XLOC_027363 CU137645.2 coding downstream 367287 26449406 ~ 26450935 (+)
XLOC_027364 iqsec3a coding downstream 414370 26496489 ~ 26766355 (+)
XLOC_027365 BX088697.1 coding downstream 488579 26570698 ~ 26570813 (+)
XLOC_027366 NA coding downstream 749136 26831255 ~ 26836675 (+)
XLOC_027345 NA non-coding upstream 963197 25084095 ~ 25089847 (+)
XLOC_027344 NA non-coding upstream 1036776 25014049 ~ 25016268 (+)
XLOC_027343 NA non-coding upstream 1294263 24758348 ~ 24758781 (+)
XLOC_027342 NA non-coding upstream 2164250 23880394 ~ 23888794 (+)
XLOC_027372 CT583696.1 non-coding downstream 2033488 28115607 ~ 28115721 (+)
XLOC_027375 CU694442.1 non-coding downstream 2302318 28384437 ~ 28407131 (+)
XLOC_027378 NA non-coding downstream 2551128 28633247 ~ 28635544 (+)

Expression


Co-expression Network