XLOC_027362 (tnni1d)


Basic Information

Item Value
gene id XLOC_027362
gene name tnni1d
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 26357221 ~ 26362129 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00053835
tgtgtattgttgtatTGTCACAGCTTTGCGGCTGCTGATATTTCATCTCTAGAACAGTGCCAAGGCATTTTTGGCAACAGACACTATATCTGCCAGCCAGTGGTGGCTGGGCTATAAAATCCTTTGTCTCACCCTGTTGTTCTGCCTCCTGTCCATGACCATCAACCGGACAAAACACAGGTACAGCATCTATGCTTACAGTAGGTTAAACAACTGACTTTGTCTTGAGACTCTTTGTTATTTTGTAGGTTACATCTGAAATCTCAAGTTGAATATCTATTTAAGTCGGCGAGTTAACAATGGGCGAGCAGATACGAAGGCCTGGAAATCCAAAAGTGGACAACAAAccaAAGTCCAAGATTTCAGCATCACGGAAGCTTTCTCTGAAGATAATGCTTCTTAACAGAGCGATGGAAGATTTGGAGAGAGAGAAACAGGAGAGGCTTGAAGAGAAAAATTGCTACCTTAAAGAAAAACACCCTCCTTTACAGCTATCTGGACTCTCACTAGAGGAGTTACAGAATCTGTGTAAGCAACTTTATTCCAAAATTGACACAGTAGATGAAGAGAGGTACGACTACGAGGATAaagtaaaaaaacacaacaaagatATAAATGAGCTTAAGTTGAAAGTTCAGGATCTTGGAGGGAAGTTCAAGAAACCTGCCTTAAGGAAGGTGCGTGTATCTGCTGATGAGATGATGCGGGCCCTGCTTGGATCCAAACACAAAGGCTCTATGGACCTTCGTGCAAATCTAAAGTCAGTCAAAAAGGAGGATATCAAACAAGAAAAGGTTTTGACCAGTGAGGTTGGTGACTGGCGTAAGAACGTGGAAGCTATGTCTGGAATGGAGGGCAGAAAGAAAATGTTTGATGCTGCTGGTGGAGGCCAGTGATCCTCTTCTTGAAAGCAAACTGACCTTCAGAATGGCCCGGGTCTTGACAGAGGAGATCTAAATGAGATTAAAAAGTTTTCTGGCTTTGTTGATCATTCTGAGCTTCTAAATTTTTTGCCAGTTCATATTACTTGCAGATGCATTATGTTTTTCCTTTTAAGTATTAGTTGACCGAACTATTTATGCCACTAACATGCATGTTAATCCAAATGAGAATTAtgttctcattttaaataaaagaaagcaCAAAATTTGAAATTTTAGAAGAATGTTGATATAGCTTGTTGCTGTACAAAGAAGGTCAACAATAACCTAGGGGCTTTAAAAATGCCAAAAAGCACCATAATGGTAGTTCATTCTTCTATACATACTGTGAAGAACACAGATGATTCTGAGGCTTACACTGTAATCTGCATTCTGTATAAACTTCTGTaatttcactttaaaatgcaTGTATATTGACTATATAAAGCTTAGTATACGTTAGACAGAGatatgtgaatgtttgtgtgtgctaCATTGAAGTCTTAAGTTAGCATTAAATGCTGCAGTATTAGCAGAACATGACTCAAACTCTTTTCAACcctcctttttttgtttttcaaacacaATATTTTGGTAAAGCATATATGTACATTATTAGACAGTGTTCCAGTTGAGACCAGCTCATTTGGGTCCAAGTCAAGACTGGGGTATGAGAGGTCCGAGTCGAGTTTGAGTCCATCAAAGAGAATATTATGAAATTATGTATTTTCCTGACACTTAATCTACCTATACAAAATATAGCAAGTTTGGGAAGCCTGTCCTGTCTGACTGAATATAAATTGAATCAAATGGAGACTAAAACATACCAGCACAATAAATAGTTTTTCCATTAACagctgtttaaaatgatatatatatcattatatatatatatatatatattatcatcatAAATCTTTTTGTTTAACTAAACAATTTGTGCTCTGGCcttttgttttggtggcagaagcATCATAGAAGACTTAACACAGAAGGAGCTCCCTCAAATTCTGGGCAGCTAAGTTGTTCAGGGCTTTGTAggtagacaataaaataaaaaagtgtatcTGATATATATAGAGAGCCAATGCAATAATGAAAGAACTGGAGCAATATcatcatatttctttgttctagaAAGCACTATGGCAGCTGATTTTGA
>TCONS_00053834
tgtgtattgttgtatTGTCACAGCTTTGCGGCTGCTGATATTTCATCTCTAGAACAGTGCCAAGGCATTTTTGGCAACAGACACTATATCTGCCAGCCAGTGGTGGCTGGGCTATAAAATCCTTTGTCTCACCCTGTTGTTCTGCCTCCTGTCCATGACCATCAACCGGACAAAACACAGGTTACATCTGAAATCTCAAGTTGAATATCTATTTAAGTCGGCGAGTTAACAATGGGCGAGCAGATACGAAGGCCTGGAAATCCAAAAGTGGACAACAAAccaAAGTCCAAGATTTCAGCATCACGGAAGCTTTCTCTGAAGATAATGCTTCTTAACAGAGCGATGGAAGATTTGGAGAGAGAGAAACAGGAGAGGCTTGAAGAGAAAAATTGCTACCTTAAAGAAAAACACCCTCCTTTACAGCTATCTGGACTCTCACTAGAGGAGTTACAGAATCTGTGTAAGCAACTTTATTCCAAAATTGACACAGTAGATGAAGAGAGGTACGACTACGAGGATAaagtaaaaaaacacaacaaagatATAAATGAGCTTAAGTTGAAAGTTCAGGATCTTGGAGGGAAGTTCAAGAAACCTGCCTTAAGGAAGGTGCGTGTATCTGCTGATGAGATGATGCGGGCCCTGCTTGGATCCAAACACAAAGGCTCTATGGACCTTCGTGCAAATCTAAAGTCAGTCAAAAAGGAGGATATCAAACAAGAAAAGGTTTTGACCAGTGAGGTTGGTGACTGGCGTAAGAACGTGGAAGCTATGTCTGGAATGGAGGGCAGAAAGAAAATGTTTGATGCTGCTGGTGGAGGCCAGTGATCCTCTTCTTGAAAGCAAACTGACCTTCAGAATGGCCCGGGTCTTGACAGAGGAGATCTAAATGAGATTAAAAAGTTTTCTGGCTTTGTTGATCATTCTGAGCTTCTAAATTTTTTGCCAGTTCATATTACTTGCAGATGCATTATGTTTTTCCTTTTAAGTATTAGTTGACCGAACTATTTATGCCACTAACATGCATGTTAATCCAAATGAGAATTAtgttctcattttaaataaaagaaagcaCAAAATTTGAAATTTTAGAAGAATGTTGATATAGCTTGTTGCTGTACAAAGAAGGTCAACAATAACCTAGGGGCTTTAAAAATGCCAAAAAGCACCATAATGGTAGTTCATTCTTCTATACATACTGTGAAGAACACAGATGATTCTGAGGCTTACACTGTAATCTGCATTCTGTATAAACTTCTGTaatttcactttaaaatgcaTGTATATTGACTATATAAAGCTTAGTATACGTTAGACAGAGatatgtgaatgtttgtgtgtgctaCATTGAAGTCTTAAGTTAGCATTAAATGCTGCAGTATTAGCAGAACATGACTCAAACTCTTTTCAACcctcctttttttgtttttcaaacacaATATTTTGGTAAAGCATATATGTACATTATTAGACAGTGTTCCAGTTGAGACCAGCTCATTTGGGTCCAAGTCAAGACTGGGGTATGAGAGGTCCGAGTCGAGTTTGAGTCCATCAAAGAGAATATTATGAAATTATGTATTTTCCTGACACTTAATCTACCTATACAAAATATAGCAAGTTTGGGAAGCCTGTCCTGTCTGACTGAATATAAATTGAATCAAATGGAGACTAAAACATACCAGCACAATAAATAGTTTTTCCATTAACagctgtttaaaatgatatatatatcattatatatatatatatatatattatcatcatAAATCTTTTTGTTTAACTAAACAATTTGTGCTCTGGCcttttgttttggtggcagaagcATCATAGAAGACTTAACACAGAAGGAGCTCCCTCAAATTCTGGGCAGCTAAGTTGTTCAGGGCTTTGTAggtagacaataaaataaaaaagtgtatcTGATATATATAGAGAGCCAATGCAATAATGAAAGAACTGGAGCAATATcatcatatttctttgttctagaAAGCACTATGGCAGCTGATTTTGA
>TCONS_00053836
GTTCTGCCTCCTGTCCATGACCATCAACCGGACAAAACACAGGTTACATCTGAAATCTCAAGTTGAATATCTATTTAAGTCGGCGAGTTAACAATGGGCGATCCGATACGAAGGCCTGGAAATCCAAAAGTGGACAACAAAccaAAGTCCAAGATTTCAGCATCACGGAAGCTTTCTCTGAAGATAATGCTTCTTAACAGAGCGATGGAAGATTTGGAGAGAGAGAAACAGGAGAGGCTTGAAGAGAAAAATTGCTACCTTAAAGAAAAACACCCTCCTTTACAGCTATCTGGACTCTCACTAGAGGAGTTACAGAATCTGTGTAAGCAACTTTATTCCAAAATTGACACAGTAGATGAAGAGAGGTACGACTACGAGGATAaagtaaaaaaacacaacaaagatATAAATGAGCTTAAGTTGAAAGTTCAGGATCTTGGAGGGAAGTTCAAGAAACCTGCCTTAAGGAAGGTGCGTGTATCTGCTGATGAGATGATGCGGGCCCTGCTTGGATCCAAACACAAAGGCTCTATGGACCTTCGTGCAAATCTAAAGTCAGTCAAAAAGGAGGATATCAAACAAGAAAAGGTTTTGACCAGTGAGGTTGGTGACTGGCGTAAGAACGTGGAAGCTATGTCTGGAATGGAGGGCAGAAAGAAAATGTTTGATGCTGCTGGTGGAGGCCAGTGATCCTCTTCTTGAAAGCAAACTGACCTTCAGAATGGCCCGGGTCTTGACAGAGGAGATCTAAATGAGATTAAAAAGTTTTCTGGCTTTGTTGATCATTCTGAGCTTCTAAATTTTTTGCCAGTTCATATTACTTGCAGATGCATTATGTTTTTCCTTTTAAGTATTAGTTGACCGAACTATTTATGCCACTAACATGCATGTTAATCCAAATGAGAATTAtgttctcattttaaataaaagaaagcaCAAAATTTGAAATTTTAGAAGAATGTTGATATAGCTTGTTGCTGTACAAAGAAGGTCAACAATAACCTAGGGGCTTTAAAAATGCCAAAAAGCACCATAATGGTAGTTCATTCTTCTATACATACTGTGAAGAACACAGATGATTCTGAGGCTTACACTGTAATCTGCATTCTGTATAAACTTCTGTaatttcactttaaaatgcaTGTATATTGACTATATAAAGCTTAGTATACGTTAGACAGAGatatgtgaatgtttgtgtgtgctaCATTGAAGTCTTAAGTTAGCATTAAATGCTGCAGTATTA
>TCONS_00053837
AGGTACAGCATCTATGCTTACAGTAGGTTAAACAACTGACTTTGTCTTGAGACTCTTTGTTATTTTGTAGGTTACATCTGAAATCTCAAGTTGAATATCTATTTAAGTCGGCGAGTTAACAATGGGCGATCCGATACGAAGGCCTGGAAATCCAAAAGTGGACAACAAAccaAAGTCCAAGATTTCAGCATCACGGAAGCTTTCTCTGAAGATAATGCTTCTTAACAGAGCGATGGAAGATTTGGAGAGAGAGAAACAGGAGAGGCTTGAAGAGAAAAATTGCTACCTTAAAGAAAAACACCCTCCTTTACAGCTATCTGGACTCTCACTAGAGGAGTTACAGAATCTGTGTAAGCAACTTTATTCCAAAATTGACACAGTAGATGAAGAGAGGTACGACTACGAGGATAaagtaaaaaaacacaacaaagatATAAATGAGCTTAAGTTGAAAGTTCAGGATCTTGGAGGGAAGTTCAAGAAACCTGCCTTAAGGAAGGTGCGTGTATCTGCTGATGAGATGATGCGGGCCCTGCTTGGATCCAAACACAAAGGCTCTATGGACCTTCGTGCAAATCTAAAGTCAGTCAAAAAGGAGGATATCAAACAAGAAAAGGTTTTGACCAGTGAGGTTGGTGACTGGCGTAAGAACGTGGAAGCTATGTCTGGAATGGAGGGCAGAAAGAAAATGTTTGATGCTGCTGGTGGAGGCCAGTGATCCTCTTCTTGAAAGCAAACTGACCTTCAGAATGGCCCGGGTCTTGACAGAGGAGATCTAAATGAGATTAAAAAGTTTTCTGGCTTTGTTGATCATTCTGAGCTTCTAAATTTTTTGCCAGTTCATATTACTTGCAGATGCATTATGTTTTTCCTTTTAAGTATTAGTTGACCGAACTATTTATGCCACTAACATGCATGTTAATCCAAATGAGAATTAtgttctcattttaaataaaagaaagcaCAAAATTTGAAATTTTAGAAGAA
>TCONS_00053838
AGGTTACATCTGAAATCTCAAGTTGAATATCTATTTAAGTCGGCGAGTTAACAATGGGCGAgtaagtaaatgttttttttttccatttataatgcataaagcagtttatatttgttttttgtaaatatttaagttCTCTAAGTTACTACTGAGCTTAACCTTCGTTATACCCTATAATCAAAGAGACATATTGATAATTTGGGGCAATGTGCATCAATTGATCAAactaaaaatgcattatttactgAAACAGATGCTTGACATAACTTTAGTCtttatttaacataataaaatatatgcttTAATGATggctgttttcatttttggttgttaACAAAATGATACCGACAGTCCGGTAAGCATTAATTTTCATTCTGTTTTCcatatttattaaaagaaatgGACATTGCTTTTagtatttatgtaatttttaaaaattattatttatactttttatatgGCAGATACGAAGGCCTGGAAATCCAAAAGTGGACAACAAAccaAAGTCCAAGATTTCAGCATCACGGAAGCTTTCTCTGAAGATAATGCTTCTTAACAGAGCGATGGAAGATTTGGAGAGAGAGAAACAGGAGAGGCTTGAAGAGAAAAATTGCTACCTTAAAGAAAAACACCCTCCTTTACAGCTATCTGGACTCTCACTAGAGGAGTTACAGAATCTGTGTAAGCAACTTTATTCCAAAATTGACACAGTAGATGAAGAGAGGTACGACTACGAGGATAaagtaaaaaaacacaa

Function

symbol description
tnni1d Predicted to be involved in cardiac muscle contraction and skeletal muscle contraction. Predicted to be part of troponin complex.

GO:

id name namespace
GO:0006936 muscle contraction biological_process
GO:0003009 skeletal muscle contraction biological_process
GO:0060048 cardiac muscle contraction biological_process
GO:0005861 troponin complex cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040718-374 Predicted to be involved in cardiac muscle contraction and skeletal muscle contraction. Predicted to be part of troponin complex.

Ensembl:

ensembl_id ENSDARG00000073766

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00053835 False 2082 mRNA 0.37 7 26357221 26362129
TCONS_00053834 False 2014 mRNA 0.37 8 26357221 26362129
TCONS_00053836 False 1246 mRNA 0.38 9 26357359 26361499
TCONS_00053837 False 987 mRNA 0.39 8 26357399 26361212
TCONS_00053838 True 757 lncRNA 0.32 4 26357467 26359451

Neighbor

gene id symbol gene type direction distance location
XLOC_027361 SCYL2 coding upstream 275102 26053044 ~ 26082119 (+)
XLOC_027360 DEPDC4 coding upstream 306103 26036682 ~ 26051118 (+)
XLOC_027359 metap2a coding upstream 340680 25950372 ~ 26016541 (+)
XLOC_027358 vezt coding upstream 410251 25912308 ~ 25946970 (+)
XLOC_027357 NA coding upstream 601872 25754037 ~ 25755349 (+)
XLOC_027363 CU137645.2 coding downstream 87277 26449406 ~ 26450935 (+)
XLOC_027364 iqsec3a coding downstream 134360 26496489 ~ 26766355 (+)
XLOC_027365 BX088697.1 coding downstream 208569 26570698 ~ 26570813 (+)
XLOC_027366 NA coding downstream 469126 26831255 ~ 26836675 (+)
XLOC_027367 slc6a1l coding downstream 610733 26972862 ~ 27079859 (+)
XLOC_027345 NA non-coding upstream 1267374 25084095 ~ 25089847 (+)
XLOC_027344 NA non-coding upstream 1340953 25014049 ~ 25016268 (+)
XLOC_027343 NA non-coding upstream 1598440 24758348 ~ 24758781 (+)
XLOC_027342 NA non-coding upstream 2468427 23880394 ~ 23888794 (+)
XLOC_027372 CT583696.1 non-coding downstream 1753478 28115607 ~ 28115721 (+)
XLOC_027375 CU694442.1 non-coding downstream 2022308 28384437 ~ 28407131 (+)
XLOC_027378 NA non-coding downstream 2271118 28633247 ~ 28635544 (+)

Expression


Co-expression Network