RNA id: TCONS_00053834


Basic Information

Item Value
RNA id TCONS_00053834
length 2014
RNA type mRNA
GC content 0.37
exon number 8
gene id XLOC_027362
representative False

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 26357221 ~ 26362129 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

tgtgtattgttgtatTGTCACAGCTTTGCGGCTGCTGATATTTCATCTCTAGAACAGTGCCAAGGCATTTTTGGCAACAGACACTATATCTGCCAGCCAGTGGTGGCTGGGCTATAAAATCCTTTGTCTCACCCTGTTGTTCTGCCTCCTGTCCATGACCATCAACCGGACAAAACACAGGTTACATCTGAAATCTCAAGTTGAATATCTATTTAAGTCGGCGAGTTAACAATGGGCGAGCAGATACGAAGGCCTGGAAATCCAAAAGTGGACAACAAAccaAAGTCCAAGATTTCAGCATCACGGAAGCTTTCTCTGAAGATAATGCTTCTTAACAGAGCGATGGAAGATTTGGAGAGAGAGAAACAGGAGAGGCTTGAAGAGAAAAATTGCTACCTTAAAGAAAAACACCCTCCTTTACAGCTATCTGGACTCTCACTAGAGGAGTTACAGAATCTGTGTAAGCAACTTTATTCCAAAATTGACACAGTAGATGAAGAGAGGTACGACTACGAGGATAaagtaaaaaaacacaacaaagatATAAATGAGCTTAAGTTGAAAGTTCAGGATCTTGGAGGGAAGTTCAAGAAACCTGCCTTAAGGAAGGTGCGTGTATCTGCTGATGAGATGATGCGGGCCCTGCTTGGATCCAAACACAAAGGCTCTATGGACCTTCGTGCAAATCTAAAGTCAGTCAAAAAGGAGGATATCAAACAAGAAAAGGTTTTGACCAGTGAGGTTGGTGACTGGCGTAAGAACGTGGAAGCTATGTCTGGAATGGAGGGCAGAAAGAAAATGTTTGATGCTGCTGGTGGAGGCCAGTGATCCTCTTCTTGAAAGCAAACTGACCTTCAGAATGGCCCGGGTCTTGACAGAGGAGATCTAAATGAGATTAAAAAGTTTTCTGGCTTTGTTGATCATTCTGAGCTTCTAAATTTTTTGCCAGTTCATATTACTTGCAGATGCATTATGTTTTTCCTTTTAAGTATTAGTTGACCGAACTATTTATGCCACTAACATGCATGTTAATCCAAATGAGAATTAtgttctcattttaaataaaagaaagcaCAAAATTTGAAATTTTAGAAGAATGTTGATATAGCTTGTTGCTGTACAAAGAAGGTCAACAATAACCTAGGGGCTTTAAAAATGCCAAAAAGCACCATAATGGTAGTTCATTCTTCTATACATACTGTGAAGAACACAGATGATTCTGAGGCTTACACTGTAATCTGCATTCTGTATAAACTTCTGTaatttcactttaaaatgcaTGTATATTGACTATATAAAGCTTAGTATACGTTAGACAGAGatatgtgaatgtttgtgtgtgctaCATTGAAGTCTTAAGTTAGCATTAAATGCTGCAGTATTAGCAGAACATGACTCAAACTCTTTTCAACcctcctttttttgtttttcaaacacaATATTTTGGTAAAGCATATATGTACATTATTAGACAGTGTTCCAGTTGAGACCAGCTCATTTGGGTCCAAGTCAAGACTGGGGTATGAGAGGTCCGAGTCGAGTTTGAGTCCATCAAAGAGAATATTATGAAATTATGTATTTTCCTGACACTTAATCTACCTATACAAAATATAGCAAGTTTGGGAAGCCTGTCCTGTCTGACTGAATATAAATTGAATCAAATGGAGACTAAAACATACCAGCACAATAAATAGTTTTTCCATTAACagctgtttaaaatgatatatatatcattatatatatatatatatatattatcatcatAAATCTTTTTGTTTAACTAAACAATTTGTGCTCTGGCcttttgttttggtggcagaagcATCATAGAAGACTTAACACAGAAGGAGCTCCCTCAAATTCTGGGCAGCTAAGTTGTTCAGGGCTTTGTAggtagacaataaaataaaaaagtgtatcTGATATATATAGAGAGCCAATGCAATAATGAAAGAACTGGAGCAATATcatcatatttctttgttctagaAAGCACTATGGCAGCTGATTTTGA

Function

GO:

id name namespace
GO:0006936 muscle contraction biological_process
GO:0003009 skeletal muscle contraction biological_process
GO:0060048 cardiac muscle contraction biological_process
GO:0005861 troponin complex cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040718-374 Predicted to be involved in cardiac muscle contraction and skeletal muscle contraction. Predicted to be part of troponin complex.

Ensembl:

ensembl_id ENSDART00000101545

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00057736 lncRNA upstream 601872 25754037 ~ 25755349 (+) True XLOC_027357
TCONS_00057735 lncRNA upstream 1267374 25084095 ~ 25089847 (+) True XLOC_027345
TCONS_00057153 lncRNA upstream 1340953 25014049 ~ 25016268 (+) True XLOC_027344
TCONS_00057152 lncRNA upstream 1598440 24758348 ~ 24758781 (+) True XLOC_027343
TCONS_00057734 lncRNA upstream 2468427 23880394 ~ 23888794 (+) True XLOC_027342
TCONS_00053841 lncRNA downstream 134374 26496503 ~ 26572656 (+) False XLOC_027364
TCONS_00057737 lncRNA downstream 469126 26831255 ~ 26836675 (+) True XLOC_027366
TCONS_00053854 lncRNA downstream 738425 27100554 ~ 27108787 (+) True XLOC_027369
TCONS_00053863 lncRNA downstream 2002134 28364263 ~ 28371438 (+) True XLOC_027373
TCONS_00057738 lncRNA downstream 2271118 28633247 ~ 28635544 (+) True XLOC_027378
TCONS_00053832 mRNA upstream 275102 26053044 ~ 26082119 (+) False XLOC_027361
TCONS_00053833 mRNA upstream 278992 26056548 ~ 26078229 (+) True XLOC_027361
TCONS_00053831 mRNA upstream 306103 26036682 ~ 26051118 (+) True XLOC_027360
TCONS_00053830 mRNA upstream 340680 25950372 ~ 26016541 (+) True XLOC_027359
TCONS_00053828 mRNA upstream 410251 25912666 ~ 25946970 (+) False XLOC_027358
TCONS_00053839 mRNA downstream 87277 26449406 ~ 26450935 (+) True XLOC_027363
TCONS_00053840 mRNA downstream 134360 26496489 ~ 26763555 (+) False XLOC_027364
TCONS_00053845 mRNA downstream 266693 26628822 ~ 26737577 (+) False XLOC_027364
TCONS_00053844 mRNA downstream 266693 26628822 ~ 26737577 (+) False XLOC_027364
TCONS_00053843 mRNA downstream 266693 26628822 ~ 26737577 (+) False XLOC_027364
TCONS_00053811 other upstream 747710 25607102 ~ 25609511 (+) False XLOC_027351
TCONS_00053789 other upstream 2977843 23379262 ~ 23379378 (+) True XLOC_027338
TCONS_00053784 other upstream 3222685 23132542 ~ 23134536 (+) False XLOC_027335
TCONS_00053781 other upstream 3224697 23127204 ~ 23132524 (+) False XLOC_027335
TCONS_00053842 other downstream 208569 26570698 ~ 26570813 (+) True XLOC_027365
TCONS_00053851 other downstream 738399 27100528 ~ 27106507 (+) False XLOC_027369
TCONS_00053853 other downstream 738425 27100554 ~ 27105396 (+) False XLOC_027369
TCONS_00053858 other downstream 1753478 28115607 ~ 28115721 (+) True XLOC_027372
TCONS_00053865 other downstream 2022308 28384437 ~ 28407131 (+) True XLOC_027375

Expression Profile

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