RNA id: TCONS_00057738


Basic Information

Item Value
RNA id TCONS_00057738
length 1891
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id XLOC_027378
representative True

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 28633247 ~ 28635544 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

cagactctTGCTCCTGTtcaaatggcgtgtacagaatcAGTTTGGGAAACAGTGTCTTTTCATCATTATAGAGCGCGTCacctgacagtcatgcaccattaagttatatgactgttttgagacATGCATATGAAGGGGCGACctcacctgtaatgaaaaggaagggaatcacGCCGTATTAATGTTTACTTCAAAgtgttttcctaccctaaacaaggcaaaagcacagaacagactcgtaTTTAAGAACAATCGACGCCTTctagtggttcggcggtatgggttgcgtatagggaggctcgactctttaatgtttatttgccacccttcagagaaagactaaaAATATACAGGAAAAAATagggaaaatacctttatgggatgatagcgggataaaactgtaaaatatggaaaaaacagCAGGGTTGATAGGTAATGTTATGCTCAAAGGACCAGGTGACAGAGGCCATTAATGACTTTCATCCACATTTTGAggcaaaattataataaagttcTATTTTTGACCACTGCTAACTTCTTCAGCAATACTTCAAATCACTCTTAGACAACATTTTTGAAACGTTTAAAAGGATTTTTAAAAGGACTTACCATAAAACTTGCTCGTCTCTAAAGGGGAGAAAATGACAATGCTTTCTGTGTTGACCCCGGAGCATTGTGCGCTTGCACAGGGTAAACGAAGTCTCAGGAGTCAAGTGAACTAATCTATTAGTTGAATCAACTAATTTTTTTCATGTTAAATCAGTGAGTTACCACCATGCTATCATTTTAATCAACCTAAACTAAAAATCTTTTGTTATCTCAACTACTATAGTGAATCTAGTTGACTTGACAAAAGAAATAACGTTGTGATGACAAAtcatggaaataatttttttacagtgtggggttGCATCAGTGGGTGGTTTTAGTCCGAGTGCCCAGTGACACCGTTGGATTTTAAGGTCATATTCGTCGAGTGACAGCTCCATTTTGATAATCGTTTCCACTAAGTCTTGGATATTATTCCCTTCGCTTCCTTCCGGGATTCCAAAGATCCGAATATTATTTCTACGGAAGAGTGTTTCTAGATCTCACCGTTTCTCTTGTAAATTTTCTTGaatatggatggattgattgagcATTTCTTTCCTCCCAGCATTGTTCTCCTCCAATTCTCCAACTCGTTGCTCTGCTTCGTTGACCTTTTCTGCGGTTGCGTTTAGGTCCATGATAAGGCCATCCAGTTTTTGATTGACTTTTAATATCCATCCGGAAAGCTTTGATGTCCGTATGTATTGCTGCAATGCTAGCTGACAGGCTATCAGCTATTCcgtctgtctttttcttttctggTTTTAATGGTTGTTTTGTCTGCATGTGaatggcttctctccagtgtggatcctcatgtgtttattaaagtatgatgattggctgaaactcttcccacactgagtgcatgtaaattgTTTCTCTCtattgtggatcatcatgtgttgtttaagggatgatgattggttgaaactcttcccacagtgaGAGCATGTGaaaggtttttctccagtgtggatctttattgtggatcatcatgtgattaTTCCGTTTTGAtaattggttgaaactcttcccacactgagtgcatgtgaatggtttctctccagtgtggatctttatGTGATTATTAAGATTTGAtaattggttgaaactcttcccacactgagtgcaagtgaatggtttctctccagtgtggatcctcatgtgaatcttaagtttgcttttgcttgccaaactctttccacactgactgCAGGTAATACGACTCTTGTCTCTTACTTTTAAAACACCAtcagtctctaaatgagttttgtcctcaattttgacaagatgttcc

Function

GO:

id name namespace
GO:0005753 mitochondrial proton-transporting ATP synthase complex cellular_component
GO:0045259 proton-transporting ATP synthase complex cellular_component
GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o) cellular_component
GO:0016020 membrane cellular_component
GO:0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00053863 lncRNA upstream 261809 28364263 ~ 28371438 (+) True XLOC_027373
TCONS_00053854 lncRNA upstream 1524460 27100554 ~ 27108787 (+) True XLOC_027369
TCONS_00057737 lncRNA upstream 1796572 26831255 ~ 26836675 (+) True XLOC_027366
TCONS_00053841 lncRNA upstream 2060591 26496503 ~ 26572656 (+) False XLOC_027364
TCONS_00053838 lncRNA upstream 2273796 26357467 ~ 26359451 (+) True XLOC_027362
TCONS_00057739 lncRNA downstream 57722 28693266 ~ 28710065 (+) False XLOC_027379
TCONS_00057740 lncRNA downstream 327230 28962774 ~ 28963359 (+) False XLOC_027430
TCONS_00057154 lncRNA downstream 451469 29087013 ~ 29088974 (+) True XLOC_027432
TCONS_00057155 lncRNA downstream 518808 29154352 ~ 29155020 (+) True XLOC_027433
TCONS_00057741 lncRNA downstream 536896 29172440 ~ 29281146 (+) True XLOC_027435
TCONS_00053869 mRNA upstream 128731 28473223 ~ 28504516 (+) False XLOC_027377
TCONS_00053871 mRNA upstream 133278 28495882 ~ 28499969 (+) False XLOC_027377
TCONS_00053870 mRNA upstream 133278 28495882 ~ 28499969 (+) True XLOC_027377
TCONS_00053867 mRNA upstream 183307 28442223 ~ 28449940 (+) False XLOC_027377
TCONS_00053866 mRNA upstream 209054 28418829 ~ 28424193 (+) True XLOC_027376
TCONS_00053926 mRNA downstream 179306 28814850 ~ 28822393 (+) True XLOC_027429
TCONS_00053927 mRNA downstream 327230 28962774 ~ 28976560 (+) True XLOC_027430
TCONS_00053928 mRNA downstream 362051 28997595 ~ 29000569 (+) False XLOC_027431
TCONS_00053929 mRNA downstream 362686 28998230 ~ 29000256 (+) True XLOC_027431
TCONS_00053930 mRNA downstream 530296 29165840 ~ 29290030 (+) True XLOC_027434
TCONS_00053868 other upstream 135182 28442262 ~ 28498065 (+) False XLOC_027377
TCONS_00053865 other upstream 226116 28384437 ~ 28407131 (+) True XLOC_027375
TCONS_00053858 other upstream 517526 28115607 ~ 28115721 (+) True XLOC_027372
TCONS_00053851 other upstream 1526740 27100528 ~ 27106507 (+) False XLOC_027369
TCONS_00053853 other upstream 1527851 27100554 ~ 27105396 (+) False XLOC_027369
TCONS_00053872 other downstream 57827 28693371 ~ 28693443 (+) False XLOC_027379
TCONS_00053873 other downstream 58084 28693628 ~ 28693708 (+) False XLOC_027379
TCONS_00053874 other downstream 58290 28693834 ~ 28693915 (+) False XLOC_027379
TCONS_00053875 other downstream 58431 28693975 ~ 28694047 (+) False XLOC_027379
TCONS_00053876 other downstream 58675 28694219 ~ 28694299 (+) True XLOC_027379

Expression Profile

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