RNA id: TCONS_00053868


Basic Information

Item Value
RNA id TCONS_00053868
length 645
RNA type nonsense_mediated_decay
GC content 0.41
exon number 5
gene id XLOC_027377
representative False

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 28442223 ~ 28504516 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAGGCTGCGCCGCTTCcacgctgtgattcaactggagaaaggataaagtgtccaaacgctgagaaaaaaaaaaaactcctgctgaagggactgatctccacactgttataaagatggcatttattaaagaggagagtgaagatgtgaagattgaagaaacattcaccgtaaaacaggaagatctgcaggaacaaacagGTTGGGACGTGTTTTCCAAAGGTGAAAGAATTTTTAGATCTATTGTTCAATTCAACAGTTCAGTGGAGGAACAGAAAGATCTGCATGCATTATTTGAGCTGTGAATGGGTGAAGCACCATGGCGAATGTTAAACAGCTGCTCGACAACTCATTGAATGGACTGTTAGAAGCTGAACTAAAGAAGTTTCAGTGGTGCTTAGTAAATCACCATAGAGATATTTCAAAAGCTGAAATGGAGAATGCAGACAGGTTGAAGACAGTGGATAAGTTGGTGTCATGTTTTGGACCAGAAAGAGCTGTGAAGATCACAGTGGACACCCTGAGGAAAATAAAACAGAATGAATTGGCTGAAGAGCTGGAGAACATACAGAAGCAAGGTGCAGCTTTAGAGAACTGTAAATCCCCTCCTGTTGATTACACAAACACCAGCCATGAACTAAAGAAGAA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000150527

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00053863 lncRNA upstream 70824 28364263 ~ 28371438 (+) True XLOC_027373
TCONS_00053854 lncRNA upstream 1333475 27100554 ~ 27108787 (+) True XLOC_027369
TCONS_00057737 lncRNA upstream 1605587 26831255 ~ 26836675 (+) True XLOC_027366
TCONS_00053841 lncRNA upstream 1869606 26496503 ~ 26572656 (+) False XLOC_027364
TCONS_00053838 lncRNA upstream 2082811 26357467 ~ 26359451 (+) True XLOC_027362
TCONS_00057738 lncRNA downstream 135182 28633247 ~ 28635544 (+) True XLOC_027378
TCONS_00057739 lncRNA downstream 195201 28693266 ~ 28710065 (+) False XLOC_027379
TCONS_00057740 lncRNA downstream 464709 28962774 ~ 28963359 (+) False XLOC_027430
TCONS_00057154 lncRNA downstream 588948 29087013 ~ 29088974 (+) True XLOC_027432
TCONS_00057155 lncRNA downstream 656287 29154352 ~ 29155020 (+) True XLOC_027433
TCONS_00053866 mRNA upstream 18069 28418829 ~ 28424193 (+) True XLOC_027376
TCONS_00053864 mRNA upstream 61954 28374628 ~ 28380308 (+) True XLOC_027374
TCONS_00053860 mRNA upstream 69005 28356606 ~ 28373257 (+) False XLOC_027373
TCONS_00053861 mRNA upstream 69005 28359718 ~ 28373257 (+) False XLOC_027373
TCONS_00053862 mRNA upstream 69005 28364237 ~ 28373257 (+) False XLOC_027373
TCONS_00053926 mRNA downstream 316785 28814850 ~ 28822393 (+) True XLOC_027429
TCONS_00053927 mRNA downstream 464709 28962774 ~ 28976560 (+) True XLOC_027430
TCONS_00053928 mRNA downstream 499530 28997595 ~ 29000569 (+) False XLOC_027431
TCONS_00053929 mRNA downstream 500165 28998230 ~ 29000256 (+) True XLOC_027431
TCONS_00053930 mRNA downstream 667775 29165840 ~ 29290030 (+) True XLOC_027434
TCONS_00053865 other upstream 35131 28384437 ~ 28407131 (+) True XLOC_027375
TCONS_00053858 other upstream 326541 28115607 ~ 28115721 (+) True XLOC_027372
TCONS_00053851 other upstream 1335755 27100528 ~ 27106507 (+) False XLOC_027369
TCONS_00053853 other upstream 1336866 27100554 ~ 27105396 (+) False XLOC_027369
TCONS_00053842 other upstream 1871449 26570698 ~ 26570813 (+) True XLOC_027365
TCONS_00053872 other downstream 195306 28693371 ~ 28693443 (+) False XLOC_027379
TCONS_00053873 other downstream 195563 28693628 ~ 28693708 (+) False XLOC_027379
TCONS_00053874 other downstream 195769 28693834 ~ 28693915 (+) False XLOC_027379
TCONS_00053875 other downstream 195910 28693975 ~ 28694047 (+) False XLOC_027379
TCONS_00053876 other downstream 196154 28694219 ~ 28694299 (+) True XLOC_027379

Expression Profile

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