RNA id: TCONS_00057740


Basic Information

Item Value
RNA id TCONS_00057740
length 586
lncRNA type sense_over
GC content 0.34
exon number 1
gene id XLOC_027430
representative False

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 28962774 ~ 28976560 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gtgacgtcataaggctgcgccgctcctTCGCTGTGATTCAATAAGAGAAAGGTTTGTTTGAAagcttttacataaatataaaccgactgattaaagtttcaggtttttcatccgAAGCTAAATGATGGAGCTGCTGTTGACGATATTATGTTAACCCTTTAAACAACGTATTACTATTTCACTAACATTAattgagggctattgtttgactaaagcacttatttattaaatagcataatgtcattccattctaagtatacTCCATATAAGAAATGAAGTAACAGTTTAATTTGTGGatattgtttcttgctcggacttaCTCTTTTACCTAATTTCTGTTGAAGCCAATGTTGAAGATAAGCTATTTTgcttctgttcattgttttacttattttaaacagaactttttttttatcgttttgttcattttaaacaggataaagtgtccaaacgcagagaaaaactcctgctgaagtgactgatctccacactgttataaagatggcgtttattaaagaggagagtgaagatgtgaagattgaagaaacattcacagtcaaacaggaagatctgcaggaacaaacag

Function

GO:

id name namespace
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0016071 mRNA metabolic process biological_process
GO:0007492 endoderm development biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0008152 metabolic process biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0010468 regulation of gene expression biological_process
GO:0044238 primary metabolic process biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:0035987 endodermal cell differentiation biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0005634 nucleus cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0005488 binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0043169 cation binding molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00057739 lncRNA upstream 252709 28693266 ~ 28710065 (+) False XLOC_027379
TCONS_00057738 lncRNA upstream 327230 28633247 ~ 28635544 (+) True XLOC_027378
TCONS_00053863 lncRNA upstream 591336 28364263 ~ 28371438 (+) True XLOC_027373
TCONS_00053854 lncRNA upstream 1853987 27100554 ~ 27108787 (+) True XLOC_027369
TCONS_00057737 lncRNA upstream 2126099 26831255 ~ 26836675 (+) True XLOC_027366
TCONS_00057154 lncRNA downstream 123654 29087013 ~ 29088974 (+) True XLOC_027432
TCONS_00057155 lncRNA downstream 190993 29154352 ~ 29155020 (+) True XLOC_027433
TCONS_00057741 lncRNA downstream 209081 29172440 ~ 29281146 (+) True XLOC_027435
TCONS_00057742 lncRNA downstream 242506 29205865 ~ 29207036 (+) False XLOC_027436
TCONS_00057156 lncRNA downstream 326889 29290248 ~ 29291593 (+) False XLOC_027437
TCONS_00053926 mRNA upstream 140381 28814850 ~ 28822393 (+) True XLOC_027429
TCONS_00053869 mRNA upstream 458258 28473223 ~ 28504516 (+) False XLOC_027377
TCONS_00053871 mRNA upstream 462805 28495882 ~ 28499969 (+) False XLOC_027377
TCONS_00053870 mRNA upstream 462805 28495882 ~ 28499969 (+) True XLOC_027377
TCONS_00053867 mRNA upstream 512834 28442223 ~ 28449940 (+) False XLOC_027377
TCONS_00053928 mRNA downstream 34236 28997595 ~ 29000569 (+) False XLOC_027431
TCONS_00053929 mRNA downstream 34871 28998230 ~ 29000256 (+) True XLOC_027431
TCONS_00053930 mRNA downstream 202481 29165840 ~ 29290030 (+) True XLOC_027434
TCONS_00053931 mRNA downstream 243454 29206813 ~ 29208680 (+) True XLOC_027436
TCONS_00053932 mRNA downstream 381598 29344957 ~ 29359540 (+) True XLOC_027438
TCONS_00053925 other upstream 253240 28709454 ~ 28709534 (+) True XLOC_027428
TCONS_00053924 other upstream 253505 28709197 ~ 28709269 (+) True XLOC_027427
TCONS_00053923 other upstream 253637 28709056 ~ 28709137 (+) True XLOC_027426
TCONS_00053922 other upstream 253844 28708850 ~ 28708930 (+) True XLOC_027425
TCONS_00053921 other upstream 254109 28708593 ~ 28708665 (+) True XLOC_027424
TCONS_00053941 other downstream 1293632 30256991 ~ 30260836 (+) True XLOC_027449
TCONS_00053946 other downstream 1682607 30645966 ~ 30646791 (+) True XLOC_027455
TCONS_00053952 other downstream 1940622 30903981 ~ 30904129 (+) True XLOC_027459
TCONS_00053953 other downstream 1941913 30905272 ~ 30905435 (+) True XLOC_027460
TCONS_00053954 other downstream 1943219 30906578 ~ 30906741 (+) True XLOC_027461

Expression Profile

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