RNA id: TCONS_00057737


Basic Information

Item Value
RNA id TCONS_00057737
length 706
lncRNA type inter_gene
GC content 0.40
exon number 7
gene id XLOC_027366
representative True

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 26831255 ~ 26836675 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGAGGGCTGCATGAAAGCCATGTTAACATTGGAAGAGTTGGACCATATCTGCTTCACATAGAAAGCTTTCAGTCCCTTGTAGACCAAAAAAAAGTTTCTGATGAGATCATGGATGCATTATTCCATCTGTTTACCATGacACAACCAGGTGTTGTGGCAATTAATACTCACACCTTAACTCAGATCTTAGAAGGTGAAGCAAGAGCAAGGAGCCGTTATTTTACCAAGTTTGCTGAAGCCTTTCTAGGAGGTGCAAAGGGGTATCTTGCATGCTCACCTGTACAGCAAGAGAGGGAGCGACTAGGGTTGCTTCTCTTCAGCTCACTTGGTAAGTTCTACACACATGTGTTTTACATATATTGATTGAGTTTCAtatttgttgttttctgtttCAGATAGGTCAGGTTTTTGTGGGATCTGTCACTTTATCTAGGAAGAGCAAGGAAAAATGTTCAGTTTGTTTAGCAAATATCCATAAAAAGTGCATACCTGACAATCAAGAAGATGCAAAGTGTTATTTTTGCAAAGTGAGGGGATTCCTGGTAGAAAGTGTCCTAAAAGTTTCAGACTTTCATCAAGCAAAGAGATACCTGGTTACATCAGAAGAGCTACAAAGGAGGTGCTCTCCACCAGAAAGTTACTCTGCAAATACAGTAGTGGCCTATCTAAGGAAAGCCAAAGGACAAAAAAGGAAAATTGCTGAGAG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00053841 lncRNA upstream 258599 26496503 ~ 26572656 (+) False XLOC_027364
TCONS_00053838 lncRNA upstream 471804 26357467 ~ 26359451 (+) True XLOC_027362
TCONS_00057736 lncRNA upstream 1075906 25754037 ~ 25755349 (+) True XLOC_027357
TCONS_00057735 lncRNA upstream 1741408 25084095 ~ 25089847 (+) True XLOC_027345
TCONS_00057153 lncRNA upstream 1814987 25014049 ~ 25016268 (+) True XLOC_027344
TCONS_00053854 lncRNA downstream 263879 27100554 ~ 27108787 (+) True XLOC_027369
TCONS_00053863 lncRNA downstream 1527588 28364263 ~ 28371438 (+) True XLOC_027373
TCONS_00057738 lncRNA downstream 1796572 28633247 ~ 28635544 (+) True XLOC_027378
TCONS_00057739 lncRNA downstream 1856591 28693266 ~ 28710065 (+) False XLOC_027379
TCONS_00057740 lncRNA downstream 2126099 28962774 ~ 28963359 (+) False XLOC_027430
TCONS_00053846 mRNA upstream 64900 26628822 ~ 26766355 (+) False XLOC_027364
TCONS_00053840 mRNA upstream 67700 26496489 ~ 26763555 (+) False XLOC_027364
TCONS_00053845 mRNA upstream 93678 26628822 ~ 26737577 (+) False XLOC_027364
TCONS_00053844 mRNA upstream 93678 26628822 ~ 26737577 (+) False XLOC_027364
TCONS_00053843 mRNA upstream 93678 26628822 ~ 26737577 (+) False XLOC_027364
TCONS_00053848 mRNA downstream 136187 26972862 ~ 27079859 (+) False XLOC_027367
TCONS_00053849 mRNA downstream 136304 26972979 ~ 27075224 (+) True XLOC_027367
TCONS_00053850 mRNA downstream 181988 27018663 ~ 27022725 (+) True XLOC_027368
TCONS_00053852 mRNA downstream 263856 27100531 ~ 27109748 (+) False XLOC_027369
TCONS_00053855 mRNA downstream 293737 27130412 ~ 27147897 (+) False XLOC_027370
TCONS_00053842 other upstream 260442 26570698 ~ 26570813 (+) True XLOC_027365
TCONS_00053811 other upstream 1221744 25607102 ~ 25609511 (+) False XLOC_027351
TCONS_00053789 other upstream 3451877 23379262 ~ 23379378 (+) True XLOC_027338
TCONS_00053784 other upstream 3696719 23132542 ~ 23134536 (+) False XLOC_027335
TCONS_00053781 other upstream 3698731 23127204 ~ 23132524 (+) False XLOC_027335
TCONS_00053851 other downstream 263853 27100528 ~ 27106507 (+) False XLOC_027369
TCONS_00053853 other downstream 263879 27100554 ~ 27105396 (+) False XLOC_027369
TCONS_00053858 other downstream 1278932 28115607 ~ 28115721 (+) True XLOC_027372
TCONS_00053865 other downstream 1547762 28384437 ~ 28407131 (+) True XLOC_027375
TCONS_00053868 other downstream 1605587 28442262 ~ 28498065 (+) False XLOC_027377

Expression Profile

//