Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00053851 |
| length | 680 |
| RNA type | processed_transcript |
| GC content | 0.43 |
| exon number | 4 |
| gene id | XLOC_027369 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007115.7 |
| NCBI id | CM002888.2 |
| chromosome length | 78093715 |
| location | 27100528 ~ 27109748 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0006487 | protein N-linked glycosylation | biological_process |
| GO:0006488 | dolichol-linked oligosaccharide biosynthetic process | biological_process |
| GO:0005783 | endoplasmic reticulum | cellular_component |
| GO:0005788 | endoplasmic reticulum lumen | cellular_component |
| GO:0005789 | endoplasmic reticulum membrane | cellular_component |
| GO:0016020 | membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0000009 | alpha-1,6-mannosyltransferase activity | molecular_function |
| GO:0000030 | mannosyltransferase activity | molecular_function |
| GO:0016740 | transferase activity | molecular_function |
| GO:0016757 | transferase activity, transferring glycosyl groups | molecular_function |
| GO:0052824 | dolichyl-pyrophosphate Man7GlcNAc2 alpha-1,6-mannosyltransferase activity | molecular_function |
| id | description |
|---|---|
| ko00510 | N-Glycan biosynthesis |
| ko00513 | Various types of N-glycan biosynthesis |
| ko01003 | Glycosyltransferases |
| id | description |
|---|---|
| ZDB-GENE-041210-295 | Predicted to enable alpha-1,6-mannosyltransferase activity. Predicted to be involved in protein N-linked glycosylation. Predicted to act upstream of or within dolichol-linked oligosaccharide biosynthetic process. Predicted to be located in endoplasmic reticulum. Predicted to be active in endoplasmic reticulum membrane. Human ortholog(s) of this gene implicated in congenital disorder of glycosylation Ig. Orthologous to human ALG12 (ALG12 alpha-1,6-mannosyltransferase). |
| ensembl_id | ENSDART00000141908 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00057737 | lncRNA | upstream | 263853 | 26831255 ~ 26836675 (+) | True | XLOC_027366 |
| TCONS_00053841 | lncRNA | upstream | 527872 | 26496503 ~ 26572656 (+) | False | XLOC_027364 |
| TCONS_00053838 | lncRNA | upstream | 741077 | 26357467 ~ 26359451 (+) | True | XLOC_027362 |
| TCONS_00057736 | lncRNA | upstream | 1345179 | 25754037 ~ 25755349 (+) | True | XLOC_027357 |
| TCONS_00057735 | lncRNA | upstream | 2010681 | 25084095 ~ 25089847 (+) | True | XLOC_027345 |
| TCONS_00053863 | lncRNA | downstream | 1257756 | 28364263 ~ 28371438 (+) | True | XLOC_027373 |
| TCONS_00057738 | lncRNA | downstream | 1526740 | 28633247 ~ 28635544 (+) | True | XLOC_027378 |
| TCONS_00057739 | lncRNA | downstream | 1586759 | 28693266 ~ 28710065 (+) | False | XLOC_027379 |
| TCONS_00057740 | lncRNA | downstream | 1856267 | 28962774 ~ 28963359 (+) | False | XLOC_027430 |
| TCONS_00057154 | lncRNA | downstream | 1980506 | 29087013 ~ 29088974 (+) | True | XLOC_027432 |
| TCONS_00053848 | mRNA | upstream | 20669 | 26972862 ~ 27079859 (+) | False | XLOC_027367 |
| TCONS_00053849 | mRNA | upstream | 25304 | 26972979 ~ 27075224 (+) | True | XLOC_027367 |
| TCONS_00053850 | mRNA | upstream | 77803 | 27018663 ~ 27022725 (+) | True | XLOC_027368 |
| TCONS_00053846 | mRNA | upstream | 334173 | 26628822 ~ 26766355 (+) | False | XLOC_027364 |
| TCONS_00053840 | mRNA | upstream | 336973 | 26496489 ~ 26763555 (+) | False | XLOC_027364 |
| TCONS_00053855 | mRNA | downstream | 23905 | 27130412 ~ 27147897 (+) | False | XLOC_027370 |
| TCONS_00053856 | mRNA | downstream | 25218 | 27131725 ~ 27150414 (+) | True | XLOC_027370 |
| TCONS_00053857 | mRNA | downstream | 792326 | 27898833 ~ 27953778 (+) | True | XLOC_027371 |
| TCONS_00053859 | mRNA | downstream | 1248551 | 28355058 ~ 28360129 (+) | False | XLOC_027373 |
| TCONS_00053860 | mRNA | downstream | 1250099 | 28356606 ~ 28373257 (+) | False | XLOC_027373 |
| TCONS_00053842 | other | upstream | 529715 | 26570698 ~ 26570813 (+) | True | XLOC_027365 |
| TCONS_00053811 | other | upstream | 1491017 | 25607102 ~ 25609511 (+) | False | XLOC_027351 |
| TCONS_00053789 | other | upstream | 3721150 | 23379262 ~ 23379378 (+) | True | XLOC_027338 |
| TCONS_00053784 | other | upstream | 3965992 | 23132542 ~ 23134536 (+) | False | XLOC_027335 |
| TCONS_00053781 | other | upstream | 3968004 | 23127204 ~ 23132524 (+) | False | XLOC_027335 |
| TCONS_00053858 | other | downstream | 1009100 | 28115607 ~ 28115721 (+) | True | XLOC_027372 |
| TCONS_00053865 | other | downstream | 1277930 | 28384437 ~ 28407131 (+) | True | XLOC_027375 |
| TCONS_00053868 | other | downstream | 1335755 | 28442262 ~ 28498065 (+) | False | XLOC_027377 |
| TCONS_00053872 | other | downstream | 1586864 | 28693371 ~ 28693443 (+) | False | XLOC_027379 |
| TCONS_00053873 | other | downstream | 1587121 | 28693628 ~ 28693708 (+) | False | XLOC_027379 |
