RNA id: TCONS_00057734


Basic Information

Item Value
RNA id TCONS_00057734
length 8210
lncRNA type antisense_over
GC content 0.36
exon number 2
gene id XLOC_027342
representative True

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 23880394 ~ 23888794 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gcctacacCAATGTCTGTTGGtattagctgtttccatccaaatatgtgAATTGGACTTATGCGCaaaaacattgaataaaacatTTGCGAACAAAGCTCTGATTCCATCTAATGAGTCAAAAGAAAAAAgtggaatttgctgtggtatgAGAATCCACTATGGGCCTTgtattttacataataaattGCATGCGCCTCAAAAGACAAAGTCAAAATGCAATGGACGTGAAGTGGCTTTTAGAAGCGCAAGACCACTCTTTTGGAGTCCAGACAGTAAAAATACCAAACCACTTTGACGATGGACTTTGGCTGAACGAATTTATGACCAAATCAACATTTCAGATGTCTTCAGATTTATTTCTTattggataaaaagtttatcctgctcaTTTGTGAACATTTTAACTTTCATTTGCATCTTGGGATTTCCATTCAACATTTTTAATGTGAAATTTCAAAATGCGCATCGGATCAAAACATAGTGCAAACAGGGCTTGAAAAAAAGCTAAGCATTTACATTTTGTGGCAgcacgagggtgagtaaatgatgacagaatatttattGTTGGGTGCACTGTACCTTTCTTTAATGACTACGCAATCCTGGCTAAAACCCTGCACTGACTGGTGTTTTCAAAGCACTCTAAGACTTAATTATCACTTGAATGGCTTGATAATTGATTTGGGACTCTCTGGTATCTCTGTAGGGATGCAGTGGACACATGGACAGCACATAGTGGATTGGGAcacagacagaaggacagacgGGGGCCTCGCCCAGAGCAGCGGTACAGTACAGAACAGTGTGACTTGACAGTCAGCACCATCATTTTTACACTACAAACATGTAATACTTGACCCCAACATTGATCAATTACttgtttttgttgtaaaaatttaagtttaaacattacaaaccacaaggcTGGGGTGTTTTATAAATATAACACATATATATGGCTGTCCATCTACTGTTACAGCAAGTTGGGCTGCAcagaaatatacatatataaatctgTATGTATATTTTCCATGTTTGGTGACGAGACTGAAATTAATCGCAATGTAAATCAATGAAAAACAAACGGAACAGAAATAAAGGGATAAAGAAGAGAGACGTGAAACACCGGAGGGTTGCGTGAACATTTGTACAACATCGGACAGGTACTGGAACACCACGCCACAGAGAAAGAGACGAGTATTAGGAAAAATGGTTTAATATCGGAGACAGAGGCAAAAAACTGCATCACACAagaacatacatttacaaaaataagtcTGACTGTTCCAGCTACACAGTTAGGTTAACAGCAAAGACAGAGAAACCAGAAAAATCTAAACAGCTAAAAGCAAAGTCCTCAAATTACTTTTATCTTGTTTGTCAAACTAATACATTTATCCACTGAAGGTGACTAAATACTTCTAAGTCGTCTAATCGTCTTTATCATGGTGACTGCACAATACTTAACTAAATGAAACTTACCGCTGTTGTAAAGACTCTTTGTAAAGACAAAACCGTATTACGTATTTATAAGCCAAAAGGAAACTCCTCGACCCTCTTTCCGAAAAACGAACAAACGAACAGAAGAAAGCAAGGAAAGCAAATATTGATGTGAAGAAGAACAAAGAAGAGGAGGCTAAAGATACCAAGCCAAAGTTCTCCTAAAAAATCTTTATATCAAAACCTAACGTTCTGGACGCCAACTAGAAATCAAACTCGGGAACCAGTCGCTGACGGCCCCTGGCTGGGGCCGCGCAGCCTGtcagaaatagttttttttttttgttttttttttcctttaattgCCAGTATAAAAAGTTCCACTGGTACAAAAGGCATAAGTACAATCAGTGATAGAAATAGGAAAGCCtgctttttttgtactttttaaattcCCATCCAATGACAGATTTCCAAAGTGTTGTCAAACAAACATGTATCACGCTTACATAATCCACTGAAATGCATTGACTTTGGCTTTTCTCAAGACAAtacttaaaactatttaaatcttTTTAGAATCAAACAAAATGATATTAATCTACAGACGACAAGCTTTTGTTACGGCACGTTAGATAAAACACATACATTTCCAAAAAACTTGACATAAGCCAAAATGCAAAGAAACTACACATCTTTTTTTTGTCCTTTAAAATACACTTGTTAAATAGCActtaagagaaagaaagaaagtaagaaagaaacaaaagaaacaacaaaCAGATTTCAGATGCGTGTGGTGCGGAAAACCCCTGAGTGAAGAGTCTCAGCGAGAGCTCCTGCGACTTTGTGCTTTGCTAAACATCCAACGAATATATGTGTATGTCAAATTGTGAAAGCTTTACCCTGTTTGTCTTAAGTTGATTGTGATTAAATGTGCTGAGCGAAGCAGAATGTCAATATCTGAGAAGCCCCGAGCTGAGGTATAAGCCGAACCGCAGTGATATTGAGGATATGAGGTCAATCGAAgatgtttttgacatttttttttttttttttttgcttgattatAATTCCTCACTTTCTTTTGAACATTTTAGGATGGAAATACTACCTTACTGGGTAAGCGAAAAGATTCTTCAGTATTAATACTGTCCGGTGCTAGTGTGCTTTTATGTTTGTGCTAGTGGTCTTACAATTTGGCAAAAAAGAACAGCATATCTTAAACCGACTGACTTTAACTTCCCAATGCGAAATGCACTCATTAAGGggaaatttattttcattatttgggACTCATTCGTGAAACTCAATCAGAACAAATGTTTATATAAACCTTTCTTTAAACCATTCAtacatacaatgtaaaaaaacgtAACAGTTTAGTTTCACgacataatacaaataaaatatgttgtttatgTGCAATTTACTGAAGGTCTTTCTGCATATGTGTCATGATTTCATTAGAATTGTCATAGCTTGAAATTCAGAAAATTTACAAACACATAATACATCAACTTTTCTAATTGAGCGGgaaaaaaatacttcaaattGTTGTATATATTTTACGCAACACTCAAAAAATCAGTTTTTTGGTTCAAACTACTTaccacaattcttaagttttttggggggacaacttaattgttttatattcaatccacttaaatttgtaaaaattaagttGATTACATtaccttaatcgatttgtgttgggacaaaattaaggaactgggtagaacccagcatttcttacagtgaagatttATAAAATTGTGGTTTTATCAATGATTTATATAGAAATGTGTTCTGCGTTtaccattggaaaaaaaaatccagaatctTTTTGCGTATTTAGAATTATTCACACAAGACAAATTTGACGTAAAAATGTCCTGCTTGCTTTTTTCCAGACAGTTTACTCAAATTCATGTGCATGGCAATTTACATACGAATGGACACAGGTTGTAATTCACGCGatgataaacaaaatataaatgaattgttctgtttgtgttaaaaaaatgtacGTACGAACATAAAACAAATTTGCGCAAGGCTGGTTTTACAAACGATTTATACAGAAATACATTCTGTTTAAGGCCAATAATTTGAGGAGGAACACATTTATGAACATTTTATGTGCTCAAATTTTACTTTAACACAACGGTATGGTTTTCAAAAACAAATTCACATGTTTGGAAATTTCAGAAAGAAGGATGTTATAAATATTCTGATTGTGCTTAAAAATTTACATAGAACAACTGTATACAATTTATACAAGTCCGGTTTACATagaacttttttttacaaacaatttaAGGAAGAACATTTTTCTGCACAATATCTAGTAATAAATTCTGTCATCTAAGAATGATTTTACAGGAAATAATTGATTCATACGAAAATGTACTTTTTACTTGGCGAACAATATATGCAAATTTGTTCTAGTTTCACGAAGGAGTCCCTTACGTTTTTAACCGGCACACAGTTTGGCAGATTTAGATTTGGCTTAGGTTTTGAAACAAAAAGGACGACAAACAACCAATCACAACGAAGACACACACCTGtattcacacacatgcagacacccTTGGCACACATTTGAAATGTGCAGCAATGAATTCCAGCCCATTAATACTGATCAAAGTGTTAAGGCAACGGCAGAGCTTGGGTATAAAATAGTGCTATAGAGTGAAGTAAACTGGTCTGACGGGGGCTGCCTGTAAACTACGTTtgtaaacaatattatttttgttttatgggcCGTTTGAACGATGTGTAAACGTTTACAGCAAAGTGCTACAGGCGCTATTGCAAACCGTGGATCACACTGAACTACTTTGGCTTCAGGACGAGATTTGGTTGTCCTACGAACGTAAAATTGTCCTGATAAAGGCAGCAAAAAAAGCAAGACTACACGGAGACGTTTTTAACTGAACTGTAATGATTATTTGTGTAACGACGAGGCTGTCACGATGGTCAAAAATTACAATTCACAGAAATACGTCAATATTTTCTCCCATCACATGGTAATTTCTGTCAATTTTGGGCCCCCTGTGGTGTAATTGGATCtacgtgtatatgtgtgtgtgtgttcataaggAGAACTGCTGAGACTCAATCTCAGGGGCTCACATACACACACCGTCAAAGAAAAGAGGGTTGTGAGGTCAACCTTTAGCACaggtgtgtgtatgcgtgcataTGTGTGCTTAcctgtgaatgtatgtgtgtgtgtgtgtgcgtgtgtgcttgtgAGAGCGATTATGACACCAAGTAAAACACTGAAGCTGTAGGCAGGATGTACCGTCAGAATTTGGCACTAAATTCCActcatcttgttttttttctttataagaaaaaaaaatcacattttgctGAACAACATAACACATCTAAATATTGTTTCCcacaatagaaataaaataatagaatgaCATAGATGCTTCACAAGCCGACACTGTAACTTTTAAGGATTTTTATATAGCTAATTACCCAACAAGAAATTTAGCAAAGAGGGACTCCTatttaaaagaacaaacaaacaaataaacaaacaaacaaaaactaaacaaaaaacgagaataaaagtaaacaaacccaaaaaaacaaacaaaattagtaGTAATTGTACTTATGAAAGGCTTTGTCTATTGTTCAAGTAAATTGATTTTTAGTCTTCTCTTTAAAAACATGAGACAAATAAGACTGTTAGACTTGATGAAACCACGACTTTATCCACGAAAAGCACCGACGGGACCGCGGGTTACAcaaactctgttttttttttcctctatacatttaaacagtataaaatatagGTCATTTCATGTGCATTTAAACCACGGATTGTCTAACTGTAAGTCAGTTCAGCAAAAGGTGTGACACGTAGGTAGCATTTCCCCCCAAACAGGgcaatcttgtgtgtgtgtgtatgtgtgtgtgtgttttttaatacCTTTACTACTCTAGAAAAAAGTGGTTTTATATAGACTTTAATGAGAAATCAAGCCACTTAAAATGGCCTTATCAAAAAACTTTACACTGcctgaaaaatgtaaaaaccaCGAGCAAGCTCTGAGAGATTCTAATATCGATcagacagcttttttttttctttttttattaaaactgcgtGGAAGTAGTCTATTCGTTTAGAAACCGACGCCGGTTTCTTACGGCAGGCCTCAAATTAAGAGTGTTTGCCAACAGTAAGTCCCGACGCCAATCCCTGTATTGAACGTTCAAGTTTACgttaaatgaatgaaacaaaaaacaacataaagagagagagaaacaaaacaatcggacaaataaaaacaaacggAAAAATAATGAACGAAAATACTCGTAAATGTTTTGCCACaggaattttttttcttcttttttttctattttcttaaAATGATGCTCTggttatgttagtaaatatactCTGTCTCTAGAGTGTGAATGCAGCgttttcacattattattattgtattttttttttctttagtctttcctcccttccttccttccctccctccctcaccagttaaaacaaagcaaaaccaaAGAAAAACAGGAATAAAACAAAGCTCAAAATGAGGTCACAtgcgatttttttttctccaaaaaagATCAGGCTAAGATCAAAGTACAAAGATCAGTTAAAAGGAGACCAGATTATGAGCAGGAGAACTCAGAAAGACATCAGAAACAATGACGGGACGAtgagacgttttttttttgtacgcCACGTAGACATGCTAGGCAAACGATGAGCATAGAGTCATGGAGATGAGTTCTAGGGAAGAAAACGGGAGAGGAGAGTTACACACACAGCTCCGGCACACAACTAACATCATTAAACCATgagaacaacaaacaaacaaacatacaaacatacaaaacaaacaaacaacagcagCAGCGCTATTAACCAGCGTTTCACCAACATCACAttagcatttgatttttttttttcgaataatACACAGAATTCTAATAGATTGGCAACACGTAAATGAGGCACTCGCTCACACATTTACAAGAACAAACACACATTCCATCTCCTCAGTACAGACACACACCCAAAAGTATCCATCCCGGTCTGAACCCCAATCCGAGGCCGCAGATGGATCGCCGTTTGGGAGaaactgttcagttttttttttttttttggagtgaacGAACAAAAACCAAACAATACGCAATGAAAcgtaaaaaagagagagatttaCACTACGTATgacgaaagagagagagagagaagaggaaGAGACAGGTATGATGGGGACGTGACGGATGGGATTGTGGGAAATGGCAAGAGGGaaggcgagagagagagaaagaaagaaagaaaacgagGGGGTTTTGTACGTGTCACACAGCGGATGGTGTGGTTTAAGAAGACTACCGGACGAGGCTCAGGATAGAGCACGACTTTCCAAACCCAATAActtaaaagataataaataaagtcCTTTACTTCAGAGGCAGTAGAAATTTTGTATAAAAATAGAActgcatttttttacaaataaaatttacaggCCTGTGGCTTTctgtaatttaagttttttttttctttcgataAATATCAAGTTTTCAGTCCCCCATCCCTCCACATAGAACCTAGAATGCTTTATTCTTTTTAAACCATCGACAgatcaaaatgtttgtttttttaatgctctACACAAATTCTGTTGGACAAAGACCACAATTATCTGACGCATAAATTcggactattttttttttgttcttcaaaaacaaataaacaaacaaacaaacacaaacgaaAATAAACATACTGAcagaaaatgaattttaaaaaaaatctaaaaaacaaattaataaaatcacTGAACATTTGACGGCAAGTATTTGTTGAGGAAGCTGTTTAGGCAGTTGTTGCCGTTGACTACAGAGAGGCCACAGCGGGTTTAACCCTTTCCTCTCTAGTGCCAGTGGGCCAAGGGTTCGAAGGAGCAGCAAAGCCCTGAACCGACACCAGAGGCCAAAGGGCAAAGGTTAATGTGCATATTGGTGCTTTAATCATATCGGAACCTTCTCTACTTGTCCTTACAAGCCTCAGGTTCacaaagagaaacaaataatactttataCATCGTTACTTTCTGCTGTTGTTTTCATCATAGAATGAAATAGCCattgtataaatatttactttaaaaaaaaatgtttacacatGACTTAAACGGAATCAAAAAATTGACCAATAATAGCTGTTCATTCATCGCAAgtcatacaaataaaataataataaatggcgGAAAATGGAAGCGTTCatgtggaggagaaaaaaaaaagagaccaaataataataataatactgttattaATTGAAAAAGCTGAAAAGACGGTTTAGGGAGAGTGGCTCCCTCTGGTGGTCAAAGGGTGAAACTCCCCCCTCGTGCACCCCCTCCCCTTGGAGTCCCAGTTTGGTGACCGTGGCAGCAGTGGGGACTTACCCTAGCAGTGTAACATGAGAGAGGCCCTAGTGCTAAGATCAGTACGGTTTGCTGTCGTTCTTCGAGCGCTTAAGTTGGACTTTGAGACGCTTCATGCCGATCTGAAAGCCGTTCATCGCCTGAATGGCGGCCTGCGCAGACACTGGATTGTCATAACTGACGAAACCTGTGGTAGAGGAAAGACAAGACAGATTTTGATCATGTTTGAGAGCAAATTACAGATTCTTCTTATTTTAGAGCAACGGTGGTTTTAGCCCGATCTCACAAggaaatataactttttt

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00057151 lncRNA upstream 28746 23844584 ~ 23851648 (+) True XLOC_027341
TCONS_00057733 lncRNA upstream 144423 23727103 ~ 23735971 (+) True XLOC_027340
TCONS_00057731 lncRNA upstream 149355 23549874 ~ 23731039 (+) False XLOC_027340
TCONS_00057732 lncRNA upstream 149355 23637162 ~ 23731039 (+) False XLOC_027340
TCONS_00057730 lncRNA upstream 374800 23432029 ~ 23505594 (+) True XLOC_027339
TCONS_00057152 lncRNA downstream 869554 24758348 ~ 24758781 (+) True XLOC_027343
TCONS_00057153 lncRNA downstream 1125255 25014049 ~ 25016268 (+) True XLOC_027344
TCONS_00057735 lncRNA downstream 1195301 25084095 ~ 25089847 (+) True XLOC_027345
TCONS_00057736 lncRNA downstream 1865243 25754037 ~ 25755349 (+) True XLOC_027357
TCONS_00053838 lncRNA downstream 2468673 26357467 ~ 26359451 (+) True XLOC_027362
TCONS_00053788 mRNA upstream 472365 23223881 ~ 23408029 (+) True XLOC_027336
TCONS_00053787 mRNA upstream 475405 23223881 ~ 23404989 (+) False XLOC_027336
TCONS_00053782 mRNA upstream 744199 23127284 ~ 23136195 (+) False XLOC_027335
TCONS_00053786 mRNA upstream 745118 23134366 ~ 23135276 (+) True XLOC_027335
TCONS_00053780 mRNA upstream 747943 23127104 ~ 23132451 (+) False XLOC_027335
TCONS_00053790 mRNA downstream 1292778 25181572 ~ 25188102 (+) False XLOC_027346
TCONS_00053791 mRNA downstream 1292778 25181572 ~ 25188160 (+) True XLOC_027346
TCONS_00053792 mRNA downstream 1331880 25220674 ~ 25245327 (+) False XLOC_027347
TCONS_00053793 mRNA downstream 1334256 25223050 ~ 25245817 (+) True XLOC_027347
TCONS_00053794 mRNA downstream 1412116 25300910 ~ 25358478 (+) False XLOC_027348
TCONS_00053789 other upstream 501016 23379262 ~ 23379378 (+) True XLOC_027338
TCONS_00053784 other upstream 745858 23132542 ~ 23134536 (+) False XLOC_027335
TCONS_00053781 other upstream 747870 23127204 ~ 23132524 (+) False XLOC_027335
TCONS_00053783 other upstream 750761 23127307 ~ 23129633 (+) False XLOC_027335
TCONS_00053765 other upstream 2038425 21841853 ~ 21841969 (+) True XLOC_027321
TCONS_00053811 other downstream 1718308 25607102 ~ 25609511 (+) False XLOC_027351
TCONS_00053842 other downstream 2681904 26570698 ~ 26570813 (+) True XLOC_027365
TCONS_00053851 other downstream 3211734 27100528 ~ 27106507 (+) False XLOC_027369
TCONS_00053853 other downstream 3211760 27100554 ~ 27105396 (+) False XLOC_027369
TCONS_00053858 other downstream 4226813 28115607 ~ 28115721 (+) True XLOC_027372

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU124408 False 6855 lncRNA 0.37 3 CI01000019 2593977 ~ 2600883 (-)
rainbow trout (Oncorhynchus mykiss) TU124408 False 636 TUCP 0.49 5 NC_048566.1 5883091 ~ 5886155 (-)
rainbow trout (Oncorhynchus mykiss) TU334971 True 2871 lncRNA 0.41 2 NC_048567.1 73972087 ~ 73974981 (+)
eurasian perch (Perca fluviatilis) TU306556 False 7064 lncRNA 0.40 2 NC_053134.1 5544846 ~ 5552199 (+)
striped catfish (Pangasianodon hypophthalmus) TU334971 True 7647 lncRNA 0.39 2 NC_047612.1 14721809 ~ 14731004 (-)