RNA id: TCONS_00053788


Basic Information

Item Value
RNA id TCONS_00053788
length 2952
RNA type mRNA
GC content 0.52
exon number 20
gene id XLOC_027336
representative True

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 23223881 ~ 23408029 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGGCATCGAGGACACGGGCATGAGGAACGGACGGGCTCTGTCCGATCAGTGGGCCGACAGCGTGGTGGTCCGACCCCGGACTACCGAGCAGCACATCACGGTGCATAAGAGACTGGTGCTGGGCTTCGCCATCTCCATCCTCACCCTCATCATCGTCACGGCCATCGCCATCACGCTCAGCGTCAGCTTCGAGAGATGCGCCGCGGAGAGCAGCGGGTGGAAACAGTCCCGGGACGGGAACATCAGTCACAGAGACTCGGAGGACGGCCAGCAGCCCTGGAGACACCTGCGCTTACCGGCCACCCTGCGCCCGCGCCACTACGACCTCCGCCTGACCGTGCACATGGAGAACTTCAGCTTCTCCGGCGAGGTGAACATCGAGTTTGAGTGCGTCAACTCCACCAAGCTGATCGTGTTGCACTCGGACCGCCTGGAGCTGGACAAAGTGCTGGTGTTTTCGGACAGTAAAAAAGCGGGCGCCATGCGGATCCAGCGCCGCTTCCACTATCAGCCCAAACAGGTGTATGTGATCGCGCTGCACAGAGAGATGAAGCCCCTCAGAACATACAAGATCAACATCACCTTCACCGCGCACATCGAGCACGAGCTGCTGGGCTTCTTCCGCAGCTCCTACATGCTCAATGGAGAAAGAAGGTTTCTGGCGGTGACGCAGTTTTCTCCGACTCACGCTAGAAAGGCCTTCCCGTGTTTTGATGAGCCCATCTATAAAGCcacattcagagtgagtctgaaACACGAGAGCTCGTATCAGTCGCTGTCCAACATGCCAGTGGAGGCCACCACATCTGATGAGGATGGATGGGTGACCAACCATTTCTCCAGGACGCCCCGCATGTCTACGTATTACCTGGCCTGGGCCGTTTGTAACTTCACCTACAAAGAAGCAGTCGCAGACAATGGAGTCCTGatTCGGCTGTACGCCAGACCTGATGCCATCCAGAGCGGATCGGGTGACTACGCTCTGCGCATCACCAAGAGACTCCTGCAGTTTTACCAGGATTACTTCAAAGTCAAATATTCCCTCCCCAAATTAGATCTGCTGGCAGTGCCGAAACATCCATATTCAGCCATGGAGAACTGGGGCCTCAGTGTGTTTGTGGAGCAAAAGATCTTGCTGGATCCCGAAGTCTCCTCCTTTTCTTATCAGATGGAGCTCACCGTGGTGGTGGTGCACGAGATCTGCCATCAGTGGTTCGGGGATCTGGTCACACCGGTTTGGTGGGAGGACGTTTGGCTGAAAGAGGGATTCGCTCATTACTTTGAGTATATTGGAGCTGATTTCCTCTTTCCAAAGTGGAACATGGAGAAGCAGAGGTTTCTGACTGATGTCCTTCATGAGGTGATGTTGCTGGACGGTTTGGCCAGTTCTCACCCAATCTCTCAGCAAGTGTTTGAAGCCACAGACATCGACAGAGTCTTTGACTGGATTGCCTATAAGAAGGGAGCTGCTCTGATCCGAATGCTGGCAAACGTCATGGGACAAACACTATTCCAGAGAGCCCTCAATGATTACTTGATGACGCATATGTACGGGAACGCAGCAAGAGATGACTTGTGGAACAAACTCTCAGAGGCTATGCAGCGAGAGGGAAAGGATATCAACATCACACAGGTTATGGACCGCTGGACTCTACAGATGGGCTATCCAGTCGTCACCATCAGCAAGAACGACAGTCTGGACAACAGCATCACTATTTCCCAAGAGCACTTTGTCTACGACACAGACGCCAAGATTCAGAATCCTGAGCTGTTCAACAAAAGcttccAGTGGCAAATACCGCTAACGCTCGCAGTGGGAAACGCCAGTCACATATCAACGGAGACCATCATTTGGGTCACAAATAAATCAGAGGCGCACAGAGTGGGTCACATGGTTGGTGAGACATGGTTGCTGGGCAACATCAATCAGACGGGCTACTTTAGAGTGAACTACGACCTTCACAACTGGAAACTTCTTATTCAACAGCTGATGAGCAACCCGACGATCATCTCTGTGGGCAACAGGGCCGGTCTGATTGATGACGTCTTCAACCTGGCGAGAGCTGGCTATTTGCCTCAAAACGTCCCCCTGCAGATGATCTCCTATTTGTCTCAGGAGCCCGAGTTTCTACCCTGGCACGCTGCTAGTCGAGCGCTTTACCAGCTGGACAAACTCCTGGACCGCACTTTAGACCACAGCCTGTTCAGCGATTACGTCCTAAGACAAGTGGAACCAAAGTATCACAAGCTCGGCTGGCCAGCCACTTCCCCTGACGGCTCCTTCATGCATTCAGCTTATCAGACAGAAGAGCTGCAGAGAGAGGTGATCATGCTGGCCTGCAGTTTTGGAAACAAACACTGTCACCGCCAGGctgtttctctcatttcagaCTGGATTTCCAGCAACAAGAACAGGATTCCACCCAACGTCCGGGACATTGTGTACTGCACGGGTGTTTCTCTGATGGATGAGGATGTGTGGGAATTTATCTGGATGAAGTTTCACTCGTCTACAGCCGTCTCTGAGAAGAAGGTTCTTTTGGAGGCCTTGACCTGCAGTGACAACATCTTCCTGCTTAACAGGCTCCTGAATCTGTCCCTCACGTCAGACCTGGTGCCGGATCAGGATGTAATTGATGTCATCATACATGTGGCCCGCAATCCACTGGGAAGACATTTAGCATGGAGATATTTCAGAGAGAAGTGGGACATTTTGAACTCCAGGTATGGAGAAGCTTTATTTATGAACTCAAAATTAATCAGCGGCGTGACAGAGTTTCTCAATACTGAGGCCGAATTGAATGAGCTGAAAGAGTTCATCCTGACCAGCGGAGGAGAGTCAGCCCCTGCGTTCGCTCGAGCCGTCGAGATCGTTCAAGCCAATGTAAAATGGCACATCCTGTTCCAGGAACAGTTTTACCAATGGCTGCGGAAAGCTCCCGATGGATAG

Function

GO:

id name namespace
GO:0008217 regulation of blood pressure biological_process
GO:0006508 proteolysis biological_process
GO:0043171 peptide catabolic process biological_process
GO:0007165 signal transduction biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0004177 aminopeptidase activity molecular_function
GO:0070006 metalloaminopeptidase activity molecular_function
GO:0046872 metal ion binding molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0008233 peptidase activity molecular_function
GO:0008237 metallopeptidase activity molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0042277 peptide binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070705-89 Predicted to enable metalloaminopeptidase activity; peptide binding activity; and zinc ion binding activity. Predicted to be involved in several processes, including peptide catabolic process; proteolysis; and regulation of blood pressure. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in cytoplasm and plasma membrane. Orthologous to human TRHDE (thyrotropin releasing hormone degrading enzyme).

Ensembl:

ensembl_id ENSDART00000089126

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00053785 lncRNA upstream 89345 23133112 ~ 23134536 (+) False XLOC_027335
TCONS_00053774 lncRNA upstream 660316 22547576 ~ 22563565 (+) True XLOC_027331
TCONS_00057729 lncRNA upstream 797244 22424450 ~ 22426637 (+) True XLOC_027329
TCONS_00057728 lncRNA upstream 881046 22338519 ~ 22342835 (+) True XLOC_027326
TCONS_00057727 lncRNA upstream 1160553 22022665 ~ 22063328 (+) True XLOC_027324
TCONS_00057730 lncRNA downstream 24000 23432029 ~ 23505594 (+) True XLOC_027339
TCONS_00057731 lncRNA downstream 141845 23549874 ~ 23731039 (+) False XLOC_027340
TCONS_00057732 lncRNA downstream 229133 23637162 ~ 23731039 (+) False XLOC_027340
TCONS_00057733 lncRNA downstream 319074 23727103 ~ 23735971 (+) True XLOC_027340
TCONS_00057151 lncRNA downstream 436555 23844584 ~ 23851648 (+) True XLOC_027341
TCONS_00053779 mRNA upstream 87686 23126558 ~ 23136195 (+) False XLOC_027335
TCONS_00053782 mRNA upstream 87686 23127284 ~ 23136195 (+) False XLOC_027335
TCONS_00053786 mRNA upstream 88605 23134366 ~ 23135276 (+) True XLOC_027335
TCONS_00053778 mRNA upstream 88632 23125689 ~ 23135249 (+) False XLOC_027335
TCONS_00053780 mRNA upstream 91430 23127104 ~ 23132451 (+) False XLOC_027335
TCONS_00053790 mRNA downstream 1773543 25181572 ~ 25188102 (+) False XLOC_027346
TCONS_00053791 mRNA downstream 1773543 25181572 ~ 25188160 (+) True XLOC_027346
TCONS_00053792 mRNA downstream 1812645 25220674 ~ 25245327 (+) False XLOC_027347
TCONS_00053793 mRNA downstream 1815021 25223050 ~ 25245817 (+) True XLOC_027347
TCONS_00053794 mRNA downstream 1892881 25300910 ~ 25358478 (+) False XLOC_027348
TCONS_00053784 other upstream 89345 23132542 ~ 23134536 (+) False XLOC_027335
TCONS_00053781 other upstream 91357 23127204 ~ 23132524 (+) False XLOC_027335
TCONS_00053783 other upstream 94248 23127307 ~ 23129633 (+) False XLOC_027335
TCONS_00053765 other upstream 1381912 21841853 ~ 21841969 (+) True XLOC_027321
TCONS_00053764 other upstream 1479897 21743863 ~ 21743984 (+) True XLOC_027320
TCONS_00053811 other downstream 2199073 25607102 ~ 25609511 (+) False XLOC_027351
TCONS_00053842 other downstream 3162669 26570698 ~ 26570813 (+) True XLOC_027365
TCONS_00053851 other downstream 3692499 27100528 ~ 27106507 (+) False XLOC_027369
TCONS_00053853 other downstream 3692525 27100554 ~ 27105396 (+) False XLOC_027369
TCONS_00053858 other downstream 4707578 28115607 ~ 28115721 (+) True XLOC_027372

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
bowfin (Amia calva) AMCG00006705 True 735 mRNA 0.59 1 CM030134.1 15066888 ~ 15067622 (+)