RNA id: TCONS_00053791


Basic Information

Item Value
RNA id TCONS_00053791
length 1672
RNA type mRNA
GC content 0.42
exon number 11
gene id XLOC_027346
representative True

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 25181572 ~ 25188160 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAAAGCGCAGAAACGCGTACTAGCGTGTAATCTCGCGGCATCAGAGGTACACACCAATCCGTGACGAAACACGCATATTTCAAAACGAGGAATTCGCGTCAGAACGCAAGGAAGAGGGAAAGGACTTGTACATTGGAAGAgttgttatttttacagtacttattgtgatctttttttagtttttgaaatgggGAAAGCGGATTTCTTAACCCCTAAAGCGATCGCGAACAGAATCAAAGCCAAAGGCCTTCAGAAGCTCCGCTGGTATTGTCAGATGTGTCAGAAACAATGTAGAGATGAAAACGGGTTTAAATGTCACTGCATGTCTGAGTCTCATCAGAGACAGCTGCTGTTAGCTTCTGAGAACCCCAACCAGTTCTTGAGCTACTTTTCAGACGAGTTCAAAACTGACTTCTTAGAACTGCTCCGAAGACGCTTTGGGACCAAACGAGTTCACAATAACATTGTGTATAACGAGTACATCAGTCATCGAGAACACGTTCATATGAATGCTACACAGTGGGAGACCCTCACCGACTTCACCAAATGGCTTGGGAGAGAAGgtTTTTGCAAAGTGGATGAGACGCCCAAAGGCTGGTATGTTCAGTACATTGATCGTGATCCAGAGACGATTCGCAGGCAGGAGGAGCTGGAGAGGAAGAAGAAACAGGACTTGGATGATGAAGAACGGAGCGCCAAGTTCATCGAAGAACAAGTTCGCCGTGGTCGGGAGGGCAGGGAGCCAACGGAGGAACCAGTATTCACAGAACTTCAGCGGAAGAGCGAAGATGAGAAAGTGGCTTTTAACCTCGAGATCGCCGCAGCTGGACCGTCCAAACCAAGCACCACTTTAGGTCCTAGTGCCCTTAAAACTACAGCATCTGTCAAAAGGAAAGAGTCTTCCCTCAGCGGAGAGTTTAAGGACAAGAAAAAGAAATCTGCTCTGGATGAGATCATcgagGAACAAAAGAAGAAATCAGTAAGATCAGATAACTGGATTCAAGAAAATATTGTAGTGAAAGTGGTAACAAAGAAACTTGGAGAGAAGTATTACAAGAAGAAAGCCATCATTCGGGAGCTACAGGGTAAATACACAGCTGTGGTGAAGATGGTGGACTCTGGAGACAAACTCAAACTGGACCAGAGTCATGTGGAGACAGTCATTCCAGCTCCTGGTAAACGAGTTTTGATCCTTAATGGTCAATATAGGGGCACAGAGGCCATACTGGAAGGCATAAATGAGCACAAATTCTCCGCCACACTGACTTTAGACTCGggTCGAATGAAAGGAAAGACAGTGGAGGGAATTGCATATGAGGATTTCTCCAAACTAGCCTGATGTTCATTTTCATCTGCAGAGCACCTCTACTGTGTCAGAgagctgataataatattataagaCTCAgaaatgacagaatttacataaTGGAACAAATTGACCAATGGGTTTTTATTGTGTTGTTgtgcattgttattttttattgtcagtgACAATGGTTGCATATTATTAAATATCTGAATTACTCCAATTATTCAACAGTAAAGTGTTGTTAATGTTGTCAATCTGGATTGCtttctttattaataaaatttagtCGATTCATGTACAGCTCTACATattcatgttttttatatattttttgtatagtATTAAAAAACCTTCTTTTTTAAT

Function

GO:

id name namespace
GO:0006974 cellular response to DNA damage stimulus biological_process
GO:0006260 DNA replication biological_process
GO:0005634 nucleus cellular_component
GO:0003690 double-stranded DNA binding molecular_function

KEGG:

id description
ko03019 Messenger RNA biogenesis

ZFIN:

id description
ZDB-GENE-030131-3689 Predicted to enable double-stranded DNA binding activity. Predicted to be involved in DNA replication and cellular response to DNA damage stimulus. Predicted to be active in nucleus. Orthologous to human KIN (Kin17 DNA and RNA binding protein).

Ensembl:

ensembl_id ENSDART00000136643

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00057735 lncRNA upstream 91725 25084095 ~ 25089847 (+) True XLOC_027345
TCONS_00057153 lncRNA upstream 165304 25014049 ~ 25016268 (+) True XLOC_027344
TCONS_00057152 lncRNA upstream 422791 24758348 ~ 24758781 (+) True XLOC_027343
TCONS_00057734 lncRNA upstream 1292778 23880394 ~ 23888794 (+) True XLOC_027342
TCONS_00057151 lncRNA upstream 1329924 23844584 ~ 23851648 (+) True XLOC_027341
TCONS_00057736 lncRNA downstream 565877 25754037 ~ 25755349 (+) True XLOC_027357
TCONS_00053838 lncRNA downstream 1169307 26357467 ~ 26359451 (+) True XLOC_027362
TCONS_00053841 lncRNA downstream 1308343 26496503 ~ 26572656 (+) False XLOC_027364
TCONS_00057737 lncRNA downstream 1643095 26831255 ~ 26836675 (+) True XLOC_027366
TCONS_00053854 lncRNA downstream 1912394 27100554 ~ 27108787 (+) True XLOC_027369
TCONS_00053788 mRNA upstream 1773543 23223881 ~ 23408029 (+) True XLOC_027336
TCONS_00053787 mRNA upstream 1776583 23223881 ~ 23404989 (+) False XLOC_027336
TCONS_00053782 mRNA upstream 2045377 23127284 ~ 23136195 (+) False XLOC_027335
TCONS_00053786 mRNA upstream 2046296 23134366 ~ 23135276 (+) True XLOC_027335
TCONS_00053780 mRNA upstream 2049121 23127104 ~ 23132451 (+) False XLOC_027335
TCONS_00053792 mRNA downstream 32514 25220674 ~ 25245327 (+) False XLOC_027347
TCONS_00053793 mRNA downstream 34890 25223050 ~ 25245817 (+) True XLOC_027347
TCONS_00053794 mRNA downstream 112750 25300910 ~ 25358478 (+) False XLOC_027348
TCONS_00053795 mRNA downstream 112814 25300974 ~ 25359034 (+) True XLOC_027348
TCONS_00053796 mRNA downstream 222133 25410293 ~ 25440944 (+) False XLOC_027349
TCONS_00053789 other upstream 1802194 23379262 ~ 23379378 (+) True XLOC_027338
TCONS_00053784 other upstream 2047036 23132542 ~ 23134536 (+) False XLOC_027335
TCONS_00053781 other upstream 2049048 23127204 ~ 23132524 (+) False XLOC_027335
TCONS_00053783 other upstream 2051939 23127307 ~ 23129633 (+) False XLOC_027335
TCONS_00053765 other upstream 3339603 21841853 ~ 21841969 (+) True XLOC_027321
TCONS_00053811 other downstream 418942 25607102 ~ 25609511 (+) False XLOC_027351
TCONS_00053842 other downstream 1382538 26570698 ~ 26570813 (+) True XLOC_027365
TCONS_00053851 other downstream 1912368 27100528 ~ 27106507 (+) False XLOC_027369
TCONS_00053853 other downstream 1912394 27100554 ~ 27105396 (+) False XLOC_027369
TCONS_00053858 other downstream 2927447 28115607 ~ 28115721 (+) True XLOC_027372

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000019_01734247_01739663.mRNA True 971 mRNA 0.45 9 CI01000019 1734247 ~ 1739663 (-)