XLOC_027348 (sfmbt2)


Basic Information

Item Value
gene id XLOC_027348
gene name sfmbt2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 25300910 ~ 25359034 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00053794
atgaaaaaaacaacaagaaatttTAATATGCTGACACAAACTTAtttgctctgtctctctcttctaGCAAGCATGGATTGTGGAGAAGAGGAGGTAGATTTCAACTGGGAAGAATATCTTGAGGATACTGGAGCCACTGCTGCCCCTCACACTTCATTTAGACATGTGGAACTCAGTCTTCAGAGCAGTTTTCAGCCAGGAATGAAGCTAGAAGTGGCCAATAAAGGCAGCGTGGACACATACTGGGTGGCCACCATCATAACCACATGTGGTCAGCTGCTACTGTTACGCTACTGTGGCTATGGTGAAGACCGCAAGGCTGACTTCTGGTGTGACGTCATGACAGCCGAACTTCATCCAGTCGGCTGGTGTGCGCAAAACGACAAAACACTTCAACCACCGGAAGCCATTAAAGAGAAGTACAGCGACTGGACTGAGTTTCTTATCAAAGAGCTCACAGGGTCACGGACAGCACCGGCAAATCTGCTGGAAGGGCCATTACGGGGTAAAAACACAGTGGATCTGATAATGGAAGGCAGTATTTTGGAGTTACGGGATGCCTCTGAGCCCAGCGTGTACTGGGCCACTCAAGTTCAGCGTAATGTCGGTGGACGTTTATGTCTCAGTTATGTTGGATTAAATGACCCCTCCTACTACATGTGGATGTTCTACCTTGACACCAGGCTCCGCCCCCTGGGCTGGGCCAAAGAAAATAACCTACCAATGAAACCGCCTACAgATCTGTGTGATTTGAGGAGCAGCTCTGAATGGACTACAGCTTTAGATGAAGCTACAGCTGAAGCCTTGAACAACCCACTTCCACTGGAGGTCTTCAagGATCATGCTGACTTGCACACACACTCCTTCAGGGCAGGAATGAAGCTTGAAATGGTCTCTCCAGTGGAACCCTTCCACATCTGCCCCGTGTCTGTGACTAAAGTCTATAATGAATACCACTTTCAGATCACTGTCGATGACCTCACAGCTGATGCCACGCCCACCAGTGCAGTGTGTCACGCAGAGTCTCCGGGAATCCTGCCAGTGCAGTGGTGTCTGAAGAATGGAGTCGAACTGGAGAGGCCGCGAGGTTTTGAGACACAGGACTTTGACTGGGCCGACTATCTTAAACACACCAGCACTGAGGCCGCTCCAGATGCGTGTTTTCCAAACGCGTCTCAGAGCCGGGGTTTCTGTAAGGACATGTGGCTTGAAGCGGTGAATCCTCTACATCCTGCTGAACTCTGCGTCGCTCGCATTACTCAGGTCAAAGGCTGTCTCCTCTGGCTCAGACTGGAAGGTCTGACAAAGCCGTTACCGGATTGTATAGTAGATGTGGAGAGTATGAATATTTTTCCTGTGGGCTGGTGTGAAGCAAACGGCTATCCACTAACACATTCACTAAAGACCGTCTGTCTGCCTCAGAAGAAGATTGCTGTCGTTCAGCCTGAGAAACATACCTATTTTTTGCTAACATGTTTGTGTTGTTTAGGTTTGGTGAATGGAAAGTACTGCTGTTCTCAGCTCTTCATCAATCATCGCTGTTTCTCTGGACCATATCTCAATAAGGGCCGAATTGCCGAGTTACCAAAGGCTGTTGGGCCTGGAAAGTGTGCTGTAGTCCTCAAAGAGATTCTGACAATGTTAATAAACTCAGCATATAAACCCGGCCGTGTACTTAGAGAACTACAGATGGTGGAAGACCCTCAGTGGAATTGTCAAGAGGAAACCCTCAAAGCCAAATATAAAGGGAAAAGCTATCGGTCCACTATGAGGATTGTCCGGACAGCGGATCAAGTGTCAGAGTTTTGTCGTCGTGTTTGCGAGAGACTCCAGTGTTGTCTGAATCTTTTTGGGCCTACGTTTGTATCCGACAAGTGTCCTGAAAACTGCTCCAGCCAAACCAAAACCAAATACACATATTATAAGAAGAGGAAAGTCGGTCGGCCAAGTTTAGGGGAAAACGCACAAGATGGTGACCTGAGCAAGCCGGCAAGACGGCGGAAGAAACGCAAAGCCATCTTTGTCCAGAAGAAACGGCGCTCATCCATTGTAGGATACCACACCACAGAGTCACCTCAGGATAGCGATTATAACTACGATGAAGACGAAGATGAGGATTTTGAGGAATGGGGCAGTGAGGCAAGTTCCAGTTCACTACGTGAAGAAGCCTCTGCCCATAATAGCCTACCGAGGAGAGGAAGACCACCACGCCGTCGCAGGATGACCCATCCAGGATCAGAGACCTCAGACAGGATCTCTCCTAGAAGAACTACACGATCGGTCTCCTACAGCCAGAACCAGATGGCCAGAGACACAAATGTGAAGATGGAGAGTACCGAAGAGGAAGATCGTCTGGTATTGGACACTAATCCTTTACAATGGAGCGTTTCAGATGTGGTGGACTTCATTACGTCTACAGATTGTGCTTCATTAGCCAAGATATTTCAAGAACAGGACATTGATGGACAAGCCTTGCTGCTGCTGACACTTCCTACAGTCCAAGAATGTATGGACCTAAAACTTGGACCTGCCATCAAACTCTGCCATCAGATCGAGAGAGTTAAAGTGGCCTTCTATTCCCAGTATGCTAACTAA
>TCONS_00053795
taGCAAGCATGGATTGTGGAGAAGAGGAGGTAGATTTCAACTGGGAAGAATATCTTGAGGATACTGGAGCCACTGCTGCCCCTCACACTTCATTTAGACATGTGGAACTCAGTCTTCAGAGCAGTTTTCAGCCAGGAATGAAGCTAGAAGTGGCCAATAAAGGCAGCGTGGACACATACTGGGTGGCCACCATCATAACCACATGTGGTCAGCTGCTACTGTTACGCTACTGTGGCTATGGTGAAGACCGCAAGGCTGACTTCTGGTGTGACGTCATGACAGCCGAACTTCATCCAGTCGGCTGGTGTGCGCAAAACGACAAAACACTTCAACCACCGGAAGCCATTAAAGAGAAGTACAGCGACTGGACTGAGTTTCTTATCAAAGAGCTCACAGGGTCACGGACAGCACCGGCAAATCTGCTGGAAGGGCCATTACGGGGTAAAAACACAGTGGATCTGATAATGGAAGGCAGTATTTTGGAGTTACGGGATGCCTCTGAGCCCAGCGTGTACTGGGCCACTCAAGTTCAGCGTAATGTCGGTGGACGTTTATGTCTCAGTTATGTTGGATTAAATGACCCCTCCTACTACATGTGGATGTTCTACCTTGACACCAGGCTCCGCCCCCTGGGCTGGGCCAAAGAAAATAACCTACCAATGAAACCGCCTACAgATCTGTGTGATTTGAGGAGCAGCTCTGAATGGACTACAGCTTTAGATGAAGCTACAGCTGAAGCCTTGAACAACCCACTTCCACTGGAGGTCTTCAagGATCATGCTGACTTGCACACACACTCCTTCAGGGCAGGAATGAAGCTTGAAATGGTCTCTCCAGTGGAACCCTTCCACATCTGCCCCGTGTCTGTGACTAAAGTCTATAATGAATACCACTTTCAGATCACTGTCGATGACCTCACAGCTGATGCCACGCCCACCAGTGCAGTGTGTCACGCAGAGTCTCCGGGAATCCTGCCAGTGCAGTGGTGTCTGAAGAATGGAGTCGAACTGGAGAGGCCGCGAGGTTTTGAGACACAGGACTTTGACTGGGCCGACTATCTTAAACACACCAGCACTGAGGCCGCTCCAGATGCGTGTTTTCCAAACGCGTCTCAGAGCCGGGGTTTCTGTAAGGACATGTGGCTTGAAGCGGTGAATCCTCTACATCCTGCTGAACTCTGCGTCGCTCGCATTACTCAGGTCAAAGGCTGTCTCCTCTGGCTCAGACTGGAAGGTCTGACAAAGCCGTTACCGGATTGTATAGTAGATGTGGAGAGTATGAATATTTTTCCTGTGGGCTGGTGTGAAGCAAACGGCTATCCACTAACACATTCACTAAAGACCGTCTGTCTGCCTCAGAAGAAGATTGCTGTCGTTCAGCCTGAGAAACACTTATGgaagtcacacacaatattcatcCTTTTTCCATTGCACCATGacctttgtctaagcaaagtcagagcttactGTTTGGTGAATGGAAAGTACTGCTGTTCTCAGCTCTTCATCAATCATCGCTGTTTCTCTGGACCATATCTCAATAAGGGCCGAATTGCCGAGTTACCAAAGGCTGTTGGGCCTGGAAAGTGTGCTGTAGTCCTCAAAGAGATTCTGACAATGTTAATAAACTCAGCATATAAACCCGGCCGTGTACTTAGAGAACTACAGATGGTGGAAGACCCTCAGTGGAATTGTCAAGAGGAAACCCTCAAAGCCAAATATAAAGGGAAAAGCTATCGGTCCACTATGAGGATTGTCCGGACAGCGGATCAAGTGTCAGAGTTTTGTCGTCGTGTTTGCGAGAGACTCCAGTGTTGTCTGAATCTTTTTGGGCCTACGTTTGTATCCGACAAGTGTCCTGAAAACTGCTCCAGCCAAACCAAAACCAAATACACATATTATAAGAAGAGGAAAGTCGGTCGGCCAAGTTTAGGGGAAAACGCACAAGATGGTGACCTGAGCAAGCCGGCAAGACGGCGGAAGAAACGCAAAGCCATCTTTGTCCAGAAGAAACGGCGCTCATCCATTGTAGGATACCACACCACAGAGTCACCTCAGGATAGCGATTATAACTACGATGAAGACGAAGATGAGGATTTTGAGGAATGGGGCAGTGAGGCAAGTTCCAGTTCACTACGTGAAGAAGCCTCTGCCCATAATAGCCTACCGAGGAGAGGAAGACCACCACGCCGTGCCGCTCTTCAGCGCAGGATGACCCATCCAGGATCAGAGACCTCAGACAGGATCTCTCCTAGAAGAACTACACGATCGGTCTCCTACAGCCAGAACCAGATGGCCAGAGACACAAATGTGAAGATGGAGAGTACCGAAGAGGAAGATCGTCTGGTATTGGACACTAATCCTTTACAATGGAGCGTTTCAGATGTGGTGGACTTCATTACGTCTACAGATTGTGCTTCATTAGCCAAGATATTTCAAGAACAGGACATTGATGGACAAGCCTTGCTGCTGCTGACACTTCCTACAGTCCAAGAATGTATGGACCTAAAACTTGGACCTGCCATCAAACTCTGCCATCAGATCGAGAGAGTTAAAGTGGCCTTCTATTCCCAGTATGCTAACTAAGCTAACTTTCTGCCTCGGCAGATATAAAAATCAACAGATACCTATTAATGAAACTCAGGGGATGAAAAAGAGTCATTCCATCCATCAGGAAACCTCAGGCGGCCTCATAACCAAATGGAGACTTTTCCATTCACTTGCCTTCAATTTGAGATTTAGCCATGGAAAGGACATTTACTTTACAAAAACAGAGTATCAGTTTGTTGCACAGTCTCTCATCAAATATTCCAAGTCTTGACACTGCAGGTAAACAGGGTAAAATAATGTACAAATTTTTACAGTATCGTCATACTTCACAAATTAATAGATTACTCTAAAAATTGCAAATGTTTCCTAATACGTTATATTTCAATATGCAAATATgccattgtttatttaaataggcACTAATTTGCATTCGTCCAAGCACAAAGATCTGAACAATCAGGTTCAAAACccttgtttctttttattttgacaGTCAAAGGTTTTTATAAGGAATATTTTGGAAATCGGAAAAACATAATTCACAATTGTTTGGTTGAATGAAATGTATATAAATCAAATTTACATATGAACA

Function

symbol description
sfmbt2 Predicted to enable chromatin binding activity and histone binding activity. Predicted to be involved in negative regulation of transcription, DNA-templated. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Orthologous to human SFMBT2 (Scm like with four mbt domains 2).

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0045892 negative regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0042393 histone binding molecular_function
GO:0003682 chromatin binding molecular_function
GO:0003714 transcription corepressor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041210-196 Predicted to enable chromatin binding activity and histone binding activity. Predicted to be involved in negative regulation of transcription, DNA-templated. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Orthologous to human SFMBT2 (Scm like with four mbt domains 2).

Ensembl:

ensembl_id ENSDARG00000045519

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00053794 False 2595 mRNA 0.48 19 25300910 25358478
TCONS_00053795 True 3141 mRNA 0.46 19 25300974 25359034

Neighbor

gene id symbol gene type direction distance location
XLOC_027347 itih5 coding upstream 55093 25220674 ~ 25245817 (+)
XLOC_027346 kin coding upstream 112750 25181572 ~ 25188160 (+)
XLOC_027345 NA coding upstream 211063 25084095 ~ 25089847 (+)
XLOC_027344 NA coding upstream 284642 25014049 ~ 25016268 (+)
XLOC_027343 NA coding upstream 542129 24758348 ~ 24758781 (+)
XLOC_027349 prkcq coding downstream 51259 25410293 ~ 25441127 (+)
XLOC_027350 il15ra coding downstream 199815 25558849 ~ 25576713 (+)
XLOC_027351 acot14 coding downstream 248067 25607101 ~ 25620734 (+)
XLOC_027352 acot15 coding downstream 268113 25627147 ~ 25647986 (+)
XLOC_027353 acot16 coding downstream 292686 25651720 ~ 25666835 (+)
XLOC_027342 NA non-coding upstream 1412116 23880394 ~ 23888794 (+)
XLOC_027341 NA non-coding upstream 1449262 23844584 ~ 23851648 (+)
XLOC_027357 NA non-coding downstream 395003 25754037 ~ 25755349 (+)
XLOC_027365 BX088697.1 non-coding downstream 1211664 26570698 ~ 26570813 (+)
XLOC_027366 NA non-coding downstream 1472221 26831255 ~ 26836675 (+)
XLOC_027372 CT583696.1 non-coding downstream 2756573 28115607 ~ 28115721 (+)
XLOC_027375 CU694442.1 non-coding downstream 3025403 28384437 ~ 28407131 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000019_01660708_01661966 NA coding CI01000019 null 1659717 ~ 1661970 (-)