Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00053778 |
| length | 1965 |
| RNA type | mRNA |
| GC content | 0.46 |
| exon number | 11 |
| gene id | XLOC_027335 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007115.7 |
| NCBI id | CM002888.2 |
| chromosome length | 78093715 |
| location | 23125689 ~ 23136195 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0035775 | pronephric glomerulus morphogenesis | biological_process |
| GO:0006357 | regulation of transcription by RNA polymerase II | biological_process |
| GO:0043066 | negative regulation of apoptotic process | biological_process |
| GO:0000122 | negative regulation of transcription by RNA polymerase II | biological_process |
| GO:0010165 | response to X-ray | biological_process |
| GO:1904036 | negative regulation of epithelial cell apoptotic process | biological_process |
| GO:0071157 | negative regulation of cell cycle arrest | biological_process |
| GO:0016567 | protein ubiquitination | biological_process |
| GO:0031647 | regulation of protein stability | biological_process |
| GO:1902254 | negative regulation of intrinsic apoptotic signaling pathway by p53 class mediator | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0005654 | nucleoplasm | cellular_component |
| GO:0005730 | nucleolus | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0001228 | DNA-binding transcription activator activity, RNA polymerase II-specific | molecular_function |
| GO:0016740 | transferase activity | molecular_function |
| GO:0046872 | metal ion binding | molecular_function |
| GO:0061630 | ubiquitin protein ligase activity | molecular_function |
| id | description |
|---|---|
| ko04120 | Ubiquitin mediated proteolysis |
| ko04068 | FoxO signaling pathway |
| ko04151 | PI3K-Akt signaling pathway |
| ko04144 | Endocytosis |
| ko04110 | Cell cycle |
| ko04115 | p53 signaling pathway |
| ko04218 | Cellular senescence |
| ko04625 | C-type lectin receptor signaling pathway |
| ko04919 | Thyroid hormone signaling pathway |
| ko05200 | Pathways in cancer |
| ko05202 | Transcriptional misregulation in cancer |
| ko05206 | MicroRNAs in cancer |
| ko05205 | Proteoglycans in cancer |
| ko05203 | Viral carcinogenesis |
| ko05214 | Glioma |
| ko05220 | Chronic myeloid leukemia |
| ko05218 | Melanoma |
| ko05219 | Bladder cancer |
| ko05215 | Prostate cancer |
| ko05163 | Human cytomegalovirus infection |
| ko05169 | Epstein-Barr virus infection |
| ko05165 | Human papillomavirus infection |
| ko05131 | Shigellosis |
| ko01524 | Platinum drug resistance |
| ko01522 | Endocrine resistance |
| ko04131 | Membrane trafficking |
| ko04121 | Ubiquitin system |
| id | description |
|---|---|
| ZDB-GENE-990415-153 | Predicted to enable p53 binding activity and ubiquitin protein ligase activity. Acts upstream of or within several processes, including negative regulation of apoptotic process; pronephric glomerulus morphogenesis; and response to X-ray. Predicted to be located in cytoplasm. Predicted to be active in nucleus. Is expressed in several structures, including blood; digestive system; mesoderm; peripheral olfactory organ; and yolk syncytial layer. Human ortholog(s) of this gene implicated in chronic myeloid leukemia; endocrine gland cancer (multiple); glioblastoma; ichthyosis; and sarcoma. Orthologous to human MDM2 (MDM2 proto-oncogene). |
| ensembl_id | ENSDART00000077854 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00053774 | lncRNA | upstream | 562124 | 22547576 ~ 22563565 (+) | True | XLOC_027331 |
| TCONS_00057729 | lncRNA | upstream | 699052 | 22424450 ~ 22426637 (+) | True | XLOC_027329 |
| TCONS_00057728 | lncRNA | upstream | 782854 | 22338519 ~ 22342835 (+) | True | XLOC_027326 |
| TCONS_00057726 | lncRNA | upstream | 1011986 | 22022625 ~ 22113703 (+) | False | XLOC_027324 |
| TCONS_00057150 | lncRNA | downstream | 165640 | 23300889 ~ 23301228 (+) | True | XLOC_027337 |
| TCONS_00057730 | lncRNA | downstream | 296780 | 23432029 ~ 23505594 (+) | True | XLOC_027339 |
| TCONS_00057731 | lncRNA | downstream | 414625 | 23549874 ~ 23731039 (+) | False | XLOC_027340 |
| TCONS_00057732 | lncRNA | downstream | 501913 | 23637162 ~ 23731039 (+) | False | XLOC_027340 |
| TCONS_00057733 | lncRNA | downstream | 591854 | 23727103 ~ 23735971 (+) | True | XLOC_027340 |
| TCONS_00053777 | mRNA | upstream | 3294 | 23117557 ~ 23122395 (+) | True | XLOC_027334 |
| TCONS_00053776 | mRNA | upstream | 411626 | 22680442 ~ 22714063 (+) | True | XLOC_027333 |
| TCONS_00053775 | mRNA | upstream | 472745 | 22613625 ~ 22652944 (+) | True | XLOC_027332 |
| TCONS_00053772 | mRNA | upstream | 642558 | 22480169 ~ 22483131 (+) | False | XLOC_027330 |
| TCONS_00053773 | mRNA | upstream | 643044 | 22480177 ~ 22482645 (+) | True | XLOC_027330 |
| TCONS_00053787 | mRNA | downstream | 88632 | 23223881 ~ 23404989 (+) | False | XLOC_027336 |
| TCONS_00053788 | mRNA | downstream | 88632 | 23223881 ~ 23408029 (+) | True | XLOC_027336 |
| TCONS_00053790 | mRNA | downstream | 2046323 | 25181572 ~ 25188102 (+) | False | XLOC_027346 |
| TCONS_00053791 | mRNA | downstream | 2046323 | 25181572 ~ 25188160 (+) | True | XLOC_027346 |
| TCONS_00053792 | mRNA | downstream | 2085425 | 25220674 ~ 25245327 (+) | False | XLOC_027347 |
| TCONS_00053765 | other | upstream | 1283720 | 21841853 ~ 21841969 (+) | True | XLOC_027321 |
| TCONS_00053764 | other | upstream | 1381705 | 21743863 ~ 21743984 (+) | True | XLOC_027320 |
| TCONS_00053730 | other | upstream | 4028245 | 19097324 ~ 19097444 (+) | True | XLOC_027292 |
| TCONS_00053726 | other | upstream | 4208607 | 18916968 ~ 18917082 (+) | True | XLOC_027289 |
| TCONS_00053705 | other | upstream | 5271274 | 17852459 ~ 17854415 (+) | True | XLOC_027274 |
| TCONS_00053789 | other | downstream | 244013 | 23379262 ~ 23379378 (+) | True | XLOC_027338 |
| TCONS_00053811 | other | downstream | 2471853 | 25607102 ~ 25609511 (+) | False | XLOC_027351 |
| TCONS_00053842 | other | downstream | 3435449 | 26570698 ~ 26570813 (+) | True | XLOC_027365 |
| TCONS_00053851 | other | downstream | 3965279 | 27100528 ~ 27106507 (+) | False | XLOC_027369 |
| TCONS_00053853 | other | downstream | 3965305 | 27100554 ~ 27105396 (+) | False | XLOC_027369 |
