RNA id: TCONS_00053833


Basic Information

Item Value
RNA id TCONS_00053833
length 2993
RNA type mRNA
GC content 0.48
exon number 17
gene id XLOC_027361
representative True

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 26053044 ~ 26082119 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGAGTCGATGTTGAATAAACTGAAGAGCACCGTGACCAAAGTGACGGCCGATGTTACCAGCGCCGTCATGGGAAACCCGGTCACACGAGAGTTCGAGGTGGGCAAACACATCGCCAGCGGTGGTCCAGGTATGAGCTGGAGGATCTACAATGGCACCAAGAAATCTACAAAACAGGAAGTGGCCGTATTTGTGTTTGACAAGAAGGTCATTGATCGCTATCAGAAGTTTGAGAAGGACCAGATTATCGATTCACTGAAGAAAGGAATTCAACAGCTTACCAGATTACGACATCCACGTCTCCTGACGGTTCAGCACCCGCTTGAAGAGTCCAGAGACTGTTTGGCGTTTTGCACAGAGCCTGTGTTTGCCAGCCTAGCGAATGTGCTCGGCCAGTGGGACAACCTGCCCAGTCCTGTTCCCACAGACATCAAAGATTACAAACTCTACGATGTAGAGACCAAATACGGCTTACTGCAGGTCTCAGAGGGTTTGTCGTTCCTCCACAGTGGAGTTAAAATGGTTCATGGTAACTTGTGCTCAGAGAACATCATCCTGAATAAAAGCGGAGCCTGGAAGATCATGGGCTTTGACTTCAGCATCTCCTCCAGCAACCCGTCTGATGCTGAGCCCAAGTATGTGTGTAAAGAGTGGGACCCCAATCTCCCGCCTCTTTGCCTCCCGAACCCAGAATATGTGGCTCCTGAATACATCCTGTCGGTCAGCTGTGATTCAGCCTCTGACATGTACTCACTGGGCGTCTTGATCCACGCCGTGTTTAATGAGGGCAAGCCTGTCTTTAAGGTCAACAAGCAGGACATATTCAAGAGCTTCAGTCGACAGCTGGACCAGCTGAGTCATCTGAGTCCAGGAGTGTTGAGTCAGATCCCCGAGGAGGTCAGACAACATGTGAAGATGCTGCTCAGCGTCACCTCCAACGTGCGTCCAGACGCAGACCAGATGACAAAGATTCCCTTCTTCGATGATGTTGGAGCGATGACTCTTCAGTACTTCGACTCGCTTTTCCAGCGGGACAACCTACAGAAGTCTCAGTTCTTTAAAGGACTCCCGAAAGTGCTGCCTAAGCTGCCCAAGAGAGTTGTTGTGTATAGAATCCTTCCAGCCCTTATGTCTGAGTTTGTAAATCCTGACATGGTGCCCTTCATTCTTCCAAACGTGCTGCTCATTGCTGAGGAGTGTACAAAAGAGGAGTATGTGCGCCTCGTTCTCCCCGACCTCACCCCAGTTTTCAAAATGCAGGAGCCAGTACAGATTCTGCTGATATTTTTGCAAAAGATGGACTTGCTTTTGACCAAAACGCCTCCTGAAGACATCAAGAACAGTGTTCTGCCTATGGTTTACAGAGCAGTGGAGGCCCCTTCTGTTCAAATACAgGAACTTTGTCTTAACATCATTCCCACATTTGCCAATTTGATTGAGTACCCATCTATGAAGAACTCTCTTATTCCTCGTATCAAATCTACCTGTTTACAGACATCCTCACTGGCGGTGAGGGTGAACTCTTTGGTTTGCCTTGGGAAGATACTGGAGTATCTGGATAAATGGTTTGTCATTGATGAAATTCTACCATTCCTGCAGCAGATTCCATCCAGAGAACCAGCTGTGCTCATGGGCATTCTGGgCATCTACAAGTGCACTTTTACCCATAAGAAACTGGGCATCCCAAAGGAGCACCTTGCTGGAAAAAGTTTACCTCATCTTGTGTCGCTTAGTATTGATAACAACCTTAACCTTAACCAGTTTAACTCTTTCATGGCTGTGATCAAGGACATGTTGACTCGCATGGAGGCCGAACACAAGGTCAAACTGGAGCAGCTACACATCATGCAGGAGCAGCAGAGGAGTTTAAATATTACAAACCCCATAAACCAATCAGAGGACACAAAGAGCACACCAAGCCCAGCCACGCAAGTCAGAGATATCGATGACATCTTTGGTGGCAGTTCAGCAAATGCCGGCGTGAATGGTAAAGAAAACGGTTCATCCACTGTCTCGCAGCCTTCTCGGGTGTCTCTCACATTGGAAGAAAAGCAGCGATTGGCTAAAGAACAGGAACAGGCTGCTAAACTAAGAAGTCAGCAGCCTTTAGCTCCACAGAGCATCAAATCAGCCACGACAACACCTCAGGCAAAGGATCTAACCAGCAGTCTTCTGAACAACATGACGTCCCTCAACAACATGTCCTTAAACTCTGGCACCAGAACGATGCCCATGCAGGGCAACACTATCTCATCCACCTTCCCGGCAGCACCGACCATGGGTGGAATGAGTACCATGAGCGTCAGCAATGGCTTCAATTCCCCCATTGGTTTCCAGACGGGAGGAATGGGGATGGGAATGAGAGCTCCCACTCCTGCCCTCTACGGCGGCATGGCCACCACAACCAGTACTCCAAATTTCAGTGCCCTCACCCAAAATCATAACCAAAACCAGCCCGGCAAACCCCCAGACATGTCAGCACTAGACTCTCTTTTCGCTTCTAACAAACCCAAAGTCAGCCTGAACCAAATGGCCCCTAAACCGACCCCAGGAACCAATGCACCTTCTCCATGGATCAATCAGTTTGGATCAGGCCAACCTCCCCAATCTGCACCCATACAGTCAAATCCGATGGGGATGTCAGGAGTTCAGGGTGGTTTTGGCATGCAAGCAAATCCGTTCTTTAACCCTCAGAACTTCTCGCAACCTGCGGCCTCTTCCACAATGAACACTGGGATGATGAAGCAAAGCGCATCGGTCAACAATGACCTTAAAGACCTTTTCGGATAAAACGTATGCCTTTTGGTTAACATTTGtgtgcgattttaaaaaggaaagaaaatcaTCGGCCAAGATAACAGTCGAAATGTTGGTGGTAAACTATGGGATCCTTGAAGAACAGTGTTTAAATAGGgttttcagtcttttttttttgctcataacAATGGTTTGCCTTCTTCAAACAGTCGACTTATGTGTGAATCAAAATCAGC

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004672 protein kinase activity molecular_function

KEGG:

id description
ko01001 Protein kinases
ko04131 Membrane trafficking

ZFIN:

id description
ZDB-GENE-041210-205 Predicted to enable ATP binding activity and protein kinase activity. Predicted to act upstream of or within protein phosphorylation. Human ortholog(s) of this gene implicated in arthrogryposis multiplex congenita-4. Orthologous to human SCYL2 (SCY1 like pseudokinase 2).

Ensembl:

ensembl_id ENSDART00000171204

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00057736 lncRNA upstream 301199 25754037 ~ 25755349 (+) True XLOC_027357
TCONS_00057735 lncRNA upstream 966701 25084095 ~ 25089847 (+) True XLOC_027345
TCONS_00057153 lncRNA upstream 1040280 25014049 ~ 25016268 (+) True XLOC_027344
TCONS_00057152 lncRNA upstream 1297767 24758348 ~ 24758781 (+) True XLOC_027343
TCONS_00057734 lncRNA upstream 2167754 23880394 ~ 23888794 (+) True XLOC_027342
TCONS_00053838 lncRNA downstream 279238 26357467 ~ 26359451 (+) True XLOC_027362
TCONS_00053841 lncRNA downstream 418274 26496503 ~ 26572656 (+) False XLOC_027364
TCONS_00057737 lncRNA downstream 753026 26831255 ~ 26836675 (+) True XLOC_027366
TCONS_00053854 lncRNA downstream 1022325 27100554 ~ 27108787 (+) True XLOC_027369
TCONS_00053863 lncRNA downstream 2286034 28364263 ~ 28371438 (+) True XLOC_027373
TCONS_00053831 mRNA upstream 5430 26036682 ~ 26051118 (+) True XLOC_027360
TCONS_00053830 mRNA upstream 40007 25950372 ~ 26016541 (+) True XLOC_027359
TCONS_00053828 mRNA upstream 109578 25912666 ~ 25946970 (+) False XLOC_027358
TCONS_00053827 mRNA upstream 109579 25912654 ~ 25946969 (+) False XLOC_027358
TCONS_00053835 mRNA downstream 278992 26357221 ~ 26362129 (+) False XLOC_027362
TCONS_00053834 mRNA downstream 278992 26357221 ~ 26362129 (+) False XLOC_027362
TCONS_00053836 mRNA downstream 279130 26357359 ~ 26361499 (+) False XLOC_027362
TCONS_00053837 mRNA downstream 279170 26357399 ~ 26361212 (+) False XLOC_027362
TCONS_00053839 mRNA downstream 371177 26449406 ~ 26450935 (+) True XLOC_027363
TCONS_00053811 other upstream 447037 25607102 ~ 25609511 (+) False XLOC_027351
TCONS_00053789 other upstream 2677170 23379262 ~ 23379378 (+) True XLOC_027338
TCONS_00053784 other upstream 2922012 23132542 ~ 23134536 (+) False XLOC_027335
TCONS_00053781 other upstream 2924024 23127204 ~ 23132524 (+) False XLOC_027335
TCONS_00053842 other downstream 492469 26570698 ~ 26570813 (+) True XLOC_027365
TCONS_00053851 other downstream 1022299 27100528 ~ 27106507 (+) False XLOC_027369
TCONS_00053853 other downstream 1022325 27100554 ~ 27105396 (+) False XLOC_027369
TCONS_00053858 other downstream 2037378 28115607 ~ 28115721 (+) True XLOC_027372
TCONS_00053865 other downstream 2306208 28384437 ~ 28407131 (+) True XLOC_027375

Expression Profile

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