XLOC_027458 (si:dkey-178j11.5)


Basic Information

Item Value
gene id XLOC_027458
gene name si:dkey-178j11.5
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 30785713 ~ 30809237 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00053950
tgtgagatcaggatcatgtgtgtccagctctgtgtctctgaagagtgactggtctAAAAATGGTCCTCCTCCAGacctcagagagaaaacaccatcatcagtcaaaagtgtgagatcaggatcatgtgtgtccagctctgtgtctatgaagagtgactgGTCAATGAATCATCCACCATACCTCaaagagaaaacaccatcatctgcccaaagtgttgaatatGAGTCACCAGATTCAGGAGACGAAACTCACAGGAGACACAAGAGTttcacagacaatctccagtgGATCTTCCAGaatcttgagagcaaaATGTTCAGATTTCTGAACAATCAACTGGAAAACTTTAGGAAAATCTTACAAGAAGAAAACAGACAAGACTTTGTAAAAGACtttaatgagaacagaagcagaatcacagaagcagctcttgatctcacactcttcttcctgagagagatgaagcaagatcaagctgctgatactctccagggcgagttgttcttcattaatcagcttaaatgtagcctgaagaggaaatatcaaagtgtgtttgaaggaattgctcagcaaggagactccacacttctgaataacatctacacagatctctacatcactcagggtgcgagtgaacaggtcaacactgaacatgagatcagacagattgaagctgcgtccagacgtcatcagtcactagagatacaggttgaatgcaaacatttgtttgaagcagctgaacaagagaaacagatcagaactgtcctgacaaaaggagttgctggcatcgggaaatcagtctctgtgcaaaagtttgttctggattgggctgaaggaaaagaaaatcaagacatcagcttcatatttcctcttccattcagagagatgaacttaaaggagaaaaaaagacaaagtttaaaagacctcataactcagtttttcccagagactaaaggactggaccttacaagaagcacacgattcacagtcctgttcatccttgatggattggatgaatgtcgtcttcctctgaactttgctggtaatgagacgtgtcgtgatgtatcttcagcagtctctctggatgttctcctgacgaacctcatcaaaggaaatctgcttccttctgctctcatctggatcaccagcagaccagcagctgccagtaagattcctgctgactgtatcaaccggctgacagagatacgaggattcaatgatgcccaaaaggaggagtacttcaggaagagactcacagatcagaatcaggccagagaaatcattgatcacattaaacagtcaaagagtctctttattatgtgccacatcccagtcttctgctggatttcagccactgttctccagaacatactgaaactgaaacacagggctcatgctgaaacactgcaggaatctcccaagactctgacacagatgtacacacacttcctccgctttcagatccagcagagcaggagaaagtatgatggagaaaacacagcagatgtctcctgggatccaaagctcatcctttcactggggaaactggccttccagcagctggaaagaaacaatgtgatcttctatgagagcgatctgaaagactgtggcattgacgtctataaggcatcggtgtactcaggcatgtgtacccagatctttaaggaggagacaGGAATCATTCTTGgcaccatgtactgctttcttcacttgagcattcaggagttcattgcagccctttatcaatATTTAGACAGCGAGAGGAAGCGTGGATTTATTTTTAGACAGAAAAGCAAAAATATGTCCATGATTGATTTgctgaagactgcagtggacaaggctctggaaagtgacaatggacatctggacctttaccttcgcttcctcctcggtctgtcactccagtccaatcgacaactcttacgaggcctgttgacacagcaggatgacagagaccagagcaaagaggaaataattgcctacatcaagcagaaacttgaagggaatctgtctccagagagatccatcaatctgttttactgtctgaatgaactgaatgatcaaactctgctgaaagagattcagtctcacctcagtagtggaagtctgtcatctgctgacctttcacctgcccagtggtctgctctggtctttgtgttgttaacctcagaggaggagctggaggagtttgagcttcagaaattccagagatcggacgagtgtctcatcagactatcagcagtcatcaaatcctccaaaagagctctGCTGcagagctgtaatctcactgttcagggctgtgagagtttgtcttcagctctacaatcctcaaactgtgtgctgagagagctggacctgagtaacaatgacctgcaggattcaggagtgaagcttctctctgatggactgaagagtcaacactgtaaactggagacactgagattgtctggctgtatggtgacagaggaaggctgtggttttctgtcttcagctctgacttcaaacccctcacacctgagagagctggatctgagctacaatcatccaggagattcaggagtcaagctgctctctgaacaactggaggatccaaactacacactggacaaactcaatctggatcatagAGGAGAGCAGAGGATTAAAGAAGGGCtgcacaaatggCTCTGTTTTCTAACACTGGATCGAAACACAGCAAACACTTGGCTCATTCTGTCTGAAGAGAAAAGAGAAGTAAAATGTGTGAgtgagaatcagccgtatcctgatcatccacacagatttgatgGTGTTTATCAGGttttgtgcagagagagtgtgtgtggacgctgttactgggagattgactggagtggagatcatgtgtgtatatcagtgtcatataagagcatcaggaggaagggagaaGATGATGAGTGTGGgtttggatataatgctcagtcctggagtttgagctgctcttcctccagattcatattcagacacaataacacacGCACTGATCTCCAAGTGTatccgctcagcaggagaataggagtgtttgtggatcacagtgcaggaactctgatcttctacaacatctatagagacacaatgagcctcatccactcagtccagaccacattcactgagccgctctgccctgggtttggGTTTAAttattctggatcatcagtgaaactgagctgaagactgacgagagatttacccagaatcctctgcaggagcagtcagtagcagtgtgtgtgtgtctgtgtgtgtgcatgtgttcactgctgttttTGTGTGCTCTCAGTGTGTGTATGCATTGCTGTGTGTACacgggtgtttgtgtgtgtgtgtgtgtgtgtgt
>TCONS_00053951
atgaagcaagatcaagctgctgatactctccagggcgagttgttcttcattaatcagcttaaatgtagcctgaagaggaaatatcaaagtgtgtttgaaggaattgctcagcaaggagactccacacttctgaataacatctacacagatctctacatcactcagggtgcgagtgaacaggtcaacactgaacatgagatcagacagattgaagctgcgtccagacgtcatcagtcactagagatacaggttgaatgcaaacatttgtttgaagcagctgaacaagagaaacagatcagaactgtcctgacaaaaggagttgctggcatcgggaaatcagtctctgtgcaaaagtttgttctggattgggctgaaggaaaagaaaatcaagacatcagcttcatatttcctcttccattcagagagatgaacttaaaggagaaaaaaagacaaagtttaaaagacctcataactcagtttttcccagagactaaaggactggaccttacaagaagcacacgattcacagtcctgttcatccttgatggattggatgaatgtcgtcttcctctgaactttgctggtaatgagacgtgtcgtgatgtatcttcagcagtctctctggatgttctcctgacgaacctcatcaaaggaaatctgcttccttctgctctcatctggatcaccagcagaccagcagctgccagtaagattcctgctgactgtatcaaccggctgacagagatacgaggattcaatgatgcccaaaaggaggagtacttcaggaagagactcacagatcagaatcaggccagagaaatcattgatcacattaaacagtcaaagagtctctttattatgtgccacatcccagtcttctgctggatttcagccactgttctccagaacatactgaaactgaaacacagggctcatgctgaaacactgcaggaatctcccaagactctgacacagatgtacacacacttcctccgctttcagatccagcagagcaggagaaagtatgatggagaaaacacagcagatgtctcctgggatccaaagctcatcctttcactggggaaactggccttccagcagctggaaagaaacaatgtgatcttctatgagagcgatctgaaagactgtggcattgacgtctataaggcatcggtgtactcaggcatgtgtacccagatctttaaggaggagacaGGAATCATTCTTGgcaccatgtactgctttcttcacttgagcattcaggagttcattgcagccctttatcaatATTTAGACAGCGAGAGGAAGCGTGGATTTATTTTTAGACAGAAAAGCAAAAATATGTCCATGATTGATTTgctgaagactgcagtggacaaggctctggaaagtgacaatggacatctggacctttaccttcgcttcctcctcggtctgtcactccagtccaatcgacaactcttacgaggcctgttgacacagcaggatgacagagaccagagcaaagaggaaataattgcctacatcaagcagaaacttgaagggaatctgtctccagagagatccatcaatctgttttactgtctgaatgaactgaatgatcaaactctgctgaaagagattcagtctcacctcagtagtggaagtctgtcatctgctgacctttcacctgcccagtggtctgctctggtctttgtgttgttaacctcagaggaggagctggaggagtttgagcttcagaaattccagagatcggacgagtgtctcatcagactatcagcagtcatcaaatcctccaaaagagctctGCTGcagagctgtaatctcactgttcagggctgtgagagtttgtcttcagctctacaatcctcaaactgtgtgctgagagagctggacctgagtaacaatgacctgcaggattcaggagtgaagcttctctctgatggactgaagagtcaacactgtaaactggagacactgagattgtctggctgtatggtgacagaggaaggctgtggttttctgtcttcagctctgacttcaaacccctcacacctgagagagctggatctgagctacaatcatccaggagattcaggagtcaagctgctctctgaacaactggaggatccaaactacacactggacaaactcaaAGAAGTAAAATGTGTGAgtgagaatcagccgtatcctgatcatccacacagatttgatgGTGTTTATCAGGttttgtgcagagagagtgtgtgtggacgctgttactgggagattgactggagtggagatcatgtgtgtatatcagtgtcatataagagcatcaggaggaagggagaaGATGATGAGTGTGGgtttggatataatgctcagtcctggagtttgagctgctcttcctccagattcatattcagacacaataacacacGCACTGATCTCCAAGTGTatccgctcagcaggagaataggagtgtttgtggatcacagtgcaggaactctgatcttctacaacatctatagagacacaatgagcctcatccactcagtccagaccacattcactgagccgctctgccctgggtttggGTTTAAttattctggatcatcagtgaaactgagctga

Function

symbol description
si:dkey-178j11.5 Predicted to be involved in intracellular signal transduction.

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-131118-10 Predicted to be involved in intracellular signal transduction.

Ensembl:

ensembl_id ENSDARG00000098115

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00053950 False 3353 mRNA 0.45 9 30785713 30809237
TCONS_00053951 True 2616 mRNA 0.45 5 30788743 30809074

Neighbor

gene id symbol gene type direction distance location
XLOC_027457 zgc:172014 coding upstream 5037 30775376 ~ 30780676 (+)
XLOC_027456 CU207245.1 coding upstream 61382 30718997 ~ 30724331 (+)
XLOC_027455 CU302413.1 coding upstream 138922 30645966 ~ 30646791 (+)
XLOC_027454 NA coding upstream 238707 30546035 ~ 30547006 (+)
XLOC_027453 si:dkey-199m13.4 coding upstream 324948 30454496 ~ 30460765 (+)
XLOC_027459 AL953856.4 coding downstream 94744 30903981 ~ 30904129 (+)
XLOC_027460 AL953856.1 coding downstream 96035 30905272 ~ 30905435 (+)
XLOC_027461 AL953856.5 coding downstream 97341 30906578 ~ 30906741 (+)
XLOC_027462 si:dkey-47k16.4 coding downstream 275777 31085014 ~ 31095639 (+)
XLOC_027463 BX571711.20 coding downstream 422333 31231570 ~ 31231725 (+)
XLOC_027452 CR383668.1 non-coding upstream 381950 30402837 ~ 30403763 (+)
XLOC_027449 CR936249.1 non-coding upstream 524877 30256991 ~ 30260836 (+)
XLOC_027448 NA non-coding upstream 594924 30186050 ~ 30190789 (+)
XLOC_027464 BX571711.1 non-coding downstream 423879 31233116 ~ 31233279 (+)

Expression


Co-expression Network